Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q7571_RS01640 Genome accession   NZ_CP131885
Coordinates   351467..352030 (+) Length   187 a.a.
NCBI ID   WP_024436448.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346467..357030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS01630 (Q7571_01635) - 346637..347326 (+) 690 WP_342255297.1 pilus assembly protein PilX -
  Q7571_RS01635 (Q7571_01640) - 347351..351457 (+) 4107 WP_024436449.1 PilC/PilY family type IV pilus protein -
  Q7571_RS01640 (Q7571_01645) comE 351467..352030 (+) 564 WP_024436448.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Q7571_RS01645 (Q7571_01650) comF 352030..352452 (+) 423 WP_024433097.1 type IV pilin protein Machinery gene
  Q7571_RS01650 (Q7571_01655) rpsP 352600..352851 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7571_RS01655 (Q7571_01660) rimM 352871..353419 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  Q7571_RS01660 (Q7571_01665) trmD 353465..354205 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7571_RS01665 (Q7571_01670) rplS 354413..354781 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  Q7571_RS01670 (Q7571_01675) - 354834..355775 (-) 942 WP_085916958.1 triacylglycerol lipase -
  Q7571_RS01675 (Q7571_01680) - 355890..356924 (-) 1035 WP_032008730.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20577.50 Da        Isoelectric Point: 8.3938

>NTDB_id=793746 Q7571_RS01640 WP_024436448.1 351467..352030(+) (comE) [Acinetobacter baumannii strain 2008S11-069]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNSSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=793746 Q7571_RS01640 WP_024436448.1 351467..352030(+) (comE) [Acinetobacter baumannii strain 2008S11-069]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAGTAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439