Detailed information NTG0793720

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW23_RS16070
• Genome accession: NZ_CP118586
• Coordinates: 3424088..3425071 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3419088..3430071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW23_RS16055	recA	3419620..3420663 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
PWW23_RS16060	pncC	3420865..3421347 (-)	483	WP_274791535.1	nicotinamide-nucleotide amidase	-
PWW23_RS16065	mutS	3421433..3423994 (+)	2562	WP_274887433.1	DNA mismatch repair protein MutS	-
PWW23_RS16070	rpoS	3424088..3425071 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW23_RS16075	-	3425152..3426075 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW23_RS16080	-	3426090..3426716 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW23_RS16085	surE	3426716..3427492 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW23_RS16090	truD	3427492..3428535 (-)	1044	WP_274887434.1	tRNA pseudouridine(13) synthase TruD	-
PWW23_RS16095	ispF	3428581..3429057 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW23_RS16100	ispD	3429072..3429782 (-)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW23_RS16105	ftsB	3429784..3430065 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793720 PWW23_RS16070 WP_005452115.1 3424088..3425071(-) (rpoS) [Vibrio harveyi strain fish6]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793720 PWW23_RS16070 WP_005452115.1 3424088..3425071(-) (rpoS) [Vibrio harveyi strain fish6]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856