Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW23_RS15940 Genome accession   NZ_CP118586
Coordinates   3401808..3402326 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain fish6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3396808..3407326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW23_RS15915 rimM 3396860..3397408 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW23_RS15920 rpsP 3397437..3397685 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW23_RS15925 ffh 3397896..3399278 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PWW23_RS15930 - 3399492..3400286 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW23_RS15935 - 3400441..3401715 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW23_RS15940 luxS 3401808..3402326 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWW23_RS15945 - 3402413..3403018 (-) 606 WP_029790340.1 hypothetical protein -
  PWW23_RS15950 gshA 3403038..3404606 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=793717 PWW23_RS15940 WP_005448429.1 3401808..3402326(-) (luxS) [Vibrio harveyi strain fish6]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793717 PWW23_RS15940 WP_005448429.1 3401808..3402326(-) (luxS) [Vibrio harveyi strain fish6]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855