Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | PWW23_RS11145 | Genome accession | NZ_CP118586 |
| Coordinates | 2450882..2452303 (+) | Length | 473 a.a. |
| NCBI ID | WP_005445536.1 | Uniprot ID | A0A9X3ML51 |
| Organism | Vibrio harveyi strain fish6 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2429382..2462485 | 2450882..2452303 | within | 0 |
Gene organization within MGE regions
Location: 2429382..2462485
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWW23_RS11040 | - | 2429382..2429888 (-) | 507 | WP_009697382.1 | AAA family ATPase | - |
| PWW23_RS11045 | - | 2430436..2430852 (-) | 417 | WP_009697380.1 | lysozyme inhibitor LprI family protein | - |
| PWW23_RS11050 | - | 2431016..2431372 (-) | 357 | WP_274791763.1 | hypothetical protein | - |
| PWW23_RS11055 | - | 2431426..2431947 (-) | 522 | WP_274791762.1 | hypothetical protein | - |
| PWW23_RS11060 | - | 2432006..2433187 (-) | 1182 | WP_230689818.1 | hypothetical protein | - |
| PWW23_RS11065 | btuD | 2433434..2434201 (-) | 768 | WP_274791761.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| PWW23_RS11070 | btuC | 2434188..2435183 (-) | 996 | WP_274791760.1 | vitamin B12 ABC transporter permease BtuC | - |
| PWW23_RS11075 | - | 2435286..2436314 (-) | 1029 | WP_005439838.1 | succinylglutamate desuccinylase | - |
| PWW23_RS11080 | - | 2436553..2438352 (-) | 1800 | WP_274791759.1 | M3 family oligoendopeptidase | - |
| PWW23_RS11085 | cobC | 2438435..2439049 (-) | 615 | WP_274791758.1 | alpha-ribazole phosphatase | - |
| PWW23_RS11090 | cobU | 2439046..2439594 (-) | 549 | WP_274887299.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| PWW23_RS11095 | - | 2439591..2440397 (-) | 807 | WP_274791756.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| PWW23_RS11100 | cobT | 2440397..2441440 (-) | 1044 | WP_274791755.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| PWW23_RS11105 | - | 2441460..2442071 (-) | 612 | WP_274887301.1 | flavin reductase family protein | - |
| PWW23_RS11110 | - | 2442807..2443502 (+) | 696 | WP_005445533.1 | NAD(P)H-binding protein | - |
| PWW23_RS11115 | - | 2443697..2445070 (+) | 1374 | WP_274887303.1 | L-cystine transporter | - |
| PWW23_RS11120 | - | 2445292..2445981 (+) | 690 | WP_101960465.1 | DUF1826 domain-containing protein | - |
| PWW23_RS11125 | - | 2446765..2447574 (-) | 810 | WP_274887305.1 | LysR family transcriptional regulator | - |
| PWW23_RS11130 | - | 2447968..2448663 (-) | 696 | WP_274887306.1 | aspartate/glutamate racemase family protein | - |
| PWW23_RS11135 | - | 2449329..2449889 (+) | 561 | WP_338115311.1 | LysE family translocator | - |
| PWW23_RS11140 | - | 2450029..2450391 (+) | 363 | WP_050921748.1 | cupin domain-containing protein | - |
| PWW23_RS11145 | sbcB | 2450882..2452303 (+) | 1422 | WP_005445536.1 | exodeoxyribonuclease I | Machinery gene |
| PWW23_RS11150 | - | 2452362..2452736 (+) | 375 | WP_005445537.1 | CidA/LrgA family protein | - |
| PWW23_RS11155 | - | 2452738..2453415 (+) | 678 | WP_005445538.1 | LrgB family protein | - |
| PWW23_RS11160 | cdd | 2453671..2454558 (+) | 888 | WP_005445539.1 | cytidine deaminase | - |
| PWW23_RS11165 | purT | 2454707..2455882 (+) | 1176 | WP_274882939.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PWW23_RS11170 | - | 2455960..2456610 (-) | 651 | WP_042606219.1 | thiopurine S-methyltransferase | - |
| PWW23_RS11175 | - | 2456947..2457720 (+) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| PWW23_RS11180 | ihfA | 2457864..2458160 (-) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| PWW23_RS11185 | - | 2458687..2459565 (+) | 879 | WP_005445545.1 | AEC family transporter | - |
| PWW23_RS11190 | - | 2459748..2459987 (+) | 240 | WP_047517048.1 | hypothetical protein | - |
| PWW23_RS11195 | - | 2460009..2460431 (+) | 423 | WP_017817999.1 | hypothetical protein | - |
| PWW23_RS11200 | - | 2460584..2460844 (+) | 261 | WP_005445548.1 | hypothetical protein | - |
| PWW23_RS11205 | - | 2460844..2461227 (+) | 384 | WP_017817997.1 | hypothetical protein | - |
| PWW23_RS11210 | - | 2461218..2461556 (+) | 339 | WP_029791121.1 | hypothetical protein | - |
| PWW23_RS11215 | - | 2461760..2462485 (+) | 726 | WP_274791750.1 | metallophosphoesterase | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54569.91 Da Isoelectric Point: 4.9808
>NTDB_id=793709 PWW23_RS11145 WP_005445536.1 2450882..2452303(+) (sbcB) [Vibrio harveyi strain fish6]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=793709 PWW23_RS11145 WP_005445536.1 2450882..2452303(+) (sbcB) [Vibrio harveyi strain fish6]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCAGTGGCTTGGCATCCAACCAACAATAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCACCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACGTTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCTCCTGCTG
ATCGCGCTGCGATGGACATTATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCAGTGGCTTGGCATCCAACCAACAATAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCACCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACGTTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCTCCTGCTG
ATCGCGCTGCGATGGACATTATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |