Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7572_RS03450 Genome accession   NZ_CP131878
Coordinates   714614..714976 (+) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709614..719976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS03435 (Q7572_03440) - 712105..713223 (-) 1119 WP_004885371.1 efflux RND transporter periplasmic adaptor subunit -
  Q7572_RS03440 (Q7572_03445) - 713283..713921 (-) 639 WP_004885373.1 hypothetical protein -
  Q7572_RS03445 (Q7572_03450) pilG 714204..714587 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  Q7572_RS03450 (Q7572_03455) pilH 714614..714976 (+) 363 WP_002051151.1 response regulator Machinery gene
  Q7572_RS03455 (Q7572_03460) - 715034..715570 (+) 537 WP_004885375.1 chemotaxis protein CheW -
  Q7572_RS03460 (Q7572_03465) - 715617..717698 (+) 2082 WP_004885376.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=793683 Q7572_RS03450 WP_002051151.1 714614..714976(+) (pilH) [Acinetobacter nosocomialis strain 2014S01-097]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=793683 Q7572_RS03450 WP_002051151.1 714614..714976(+) (pilH) [Acinetobacter nosocomialis strain 2014S01-097]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392