Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   Q7572_RS03310 Genome accession   NZ_CP131878
Coordinates   685353..685868 (-) Length   171 a.a.
NCBI ID   WP_004712040.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680353..690868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS03285 (Q7572_03290) - 680894..682537 (+) 1644 WP_004885339.1 nitrite/sulfite reductase -
  Q7572_RS03290 (Q7572_03295) - 682530..683015 (+) 486 WP_004885341.1 DUF934 domain-containing protein -
  Q7572_RS03295 (Q7572_03300) - 683094..683447 (+) 354 WP_002051463.1 SMR family transporter -
  Q7572_RS03300 (Q7572_03305) - 683500..683943 (-) 444 WP_002051396.1 VOC family protein -
  Q7572_RS03305 (Q7572_03310) - 684069..685244 (-) 1176 WP_004885343.1 thiolase family protein -
  Q7572_RS03310 (Q7572_03315) fimT 685353..685868 (-) 516 WP_004712040.1 GspH/FimT family pseudopilin Machinery gene
  Q7572_RS03315 (Q7572_03320) omp38 686248..687276 (+) 1029 WP_004885345.1 outer membrane protein Omp38 -
  Q7572_RS03320 (Q7572_03325) - 687403..687561 (-) 159 WP_004885347.1 hypothetical protein -
  Q7572_RS03325 (Q7572_03330) - 687565..688770 (-) 1206 WP_004885349.1 RtcB family protein -
  Q7572_RS03330 (Q7572_03335) - 689049..690509 (-) 1461 WP_002051328.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19424.63 Da        Isoelectric Point: 8.8332

>NTDB_id=793681 Q7572_RS03310 WP_004712040.1 685353..685868(-) (fimT) [Acinetobacter nosocomialis strain 2014S01-097]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIKHKNIVLCPSSDQVICNTDWN
KHLISFIDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=793681 Q7572_RS03310 WP_004712040.1 685353..685868(-) (fimT) [Acinetobacter nosocomialis strain 2014S01-097]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTAAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCATAGATAGTAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427