Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWW25_RS19715 Genome accession   NZ_CP118585
Coordinates   540019..541116 (+) Length   365 a.a.
NCBI ID   WP_050908261.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish5     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 535019..546116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS19685 - 535251..536240 (+) 990 WP_274877540.1 Gfo/Idh/MocA family oxidoreductase -
  PWW25_RS19690 - 536382..537719 (-) 1338 WP_274877541.1 MATE family efflux transporter -
  PWW25_RS19695 - 537843..538157 (-) 315 WP_005453573.1 DUF496 family protein -
  PWW25_RS19700 - 538396..538599 (+) 204 WP_009696233.1 hypothetical protein -
  PWW25_RS19705 - 538693..539346 (+) 654 WP_005453575.1 YceH family protein -
  PWW25_RS19710 - 539343..539669 (+) 327 WP_050908252.1 GIY-YIG nuclease family protein -
  PWW25_RS19715 luxP 540019..541116 (+) 1098 WP_050908261.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PWW25_RS19720 luxQ 541116..543695 (+) 2580 WP_005453581.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWW25_RS19725 - 543763..544425 (-) 663 WP_274877542.1 PilZ domain-containing protein -
  PWW25_RS19730 - 544519..545445 (-) 927 WP_009696230.1 DMT family transporter -
  PWW25_RS19735 - 545595..546050 (+) 456 WP_005453588.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41548.01 Da        Isoelectric Point: 6.7059

>NTDB_id=793680 PWW25_RS19715 WP_050908261.1 540019..541116(+) (luxP) [Vibrio harveyi strain fish5]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPLSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793680 PWW25_RS19715 WP_050908261.1 540019..541116(+) (luxP) [Vibrio harveyi strain fish5]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTATCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTACGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCATTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCAAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGATGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTTATGCGTATGAATGATGATACTGGTATCGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.462

99.726

0.633