Detailed information NTG0793661

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW25_RS11520
• Genome accession: NZ_CP118584
• Coordinates: 2475975..2476958 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2470975..2481958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW25_RS11505	recA	2471507..2472550 (-)	1044	WP_053050623.1	recombinase RecA	Machinery gene
PWW25_RS11510	pncC	2472752..2473234 (-)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
PWW25_RS11515	mutS	2473320..2475881 (+)	2562	WP_050907764.1	DNA mismatch repair protein MutS	-
PWW25_RS11520	rpoS	2475975..2476958 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW25_RS11525	-	2477039..2477962 (-)	924	WP_274876445.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW25_RS11530	-	2477977..2478603 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW25_RS11535	surE	2478603..2479379 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW25_RS11540	truD	2479379..2480422 (-)	1044	WP_274876446.1	tRNA pseudouridine(13) synthase TruD	-
PWW25_RS11545	ispF	2480468..2480944 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW25_RS11550	ispD	2480959..2481669 (-)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW25_RS11555	ftsB	2481671..2481952 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793661 PWW25_RS11520 WP_005452115.1 2475975..2476958(-) (rpoS) [Vibrio harveyi strain fish5]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793661 PWW25_RS11520 WP_005452115.1 2475975..2476958(-) (rpoS) [Vibrio harveyi strain fish5]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACATGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856