Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW25_RS11390 Genome accession   NZ_CP118584
Coordinates   2453697..2454215 (-) Length   172 a.a.
NCBI ID   WP_017189128.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448697..2459215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS11365 rimM 2448749..2449297 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW25_RS11370 rpsP 2449326..2449574 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW25_RS11375 ffh 2449785..2451167 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PWW25_RS11380 - 2451381..2452175 (+) 795 WP_038897985.1 inner membrane protein YpjD -
  PWW25_RS11385 - 2452330..2453604 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW25_RS11390 luxS 2453697..2454215 (-) 519 WP_017189128.1 S-ribosylhomocysteine lyase Regulator
  PWW25_RS11395 - 2454302..2454865 (-) 564 WP_005448430.1 hypothetical protein -
  PWW25_RS11400 gshA 2454927..2456495 (-) 1569 WP_274876441.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19053.86 Da        Isoelectric Point: 5.2440

>NTDB_id=793658 PWW25_RS11390 WP_017189128.1 2453697..2454215(-) (luxS) [Vibrio harveyi strain fish5]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILKAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793658 PWW25_RS11390 WP_017189128.1 2453697..2454215(-) (luxS) [Vibrio harveyi strain fish5]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGATACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATATCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAAAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855