Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWW29_RS20845 Genome accession   NZ_CP118583
Coordinates   882482..883579 (-) Length   365 a.a.
NCBI ID   WP_005453580.1    Uniprot ID   A0A9X3RVB5
Organism   Vibrio harveyi strain fish4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 877482..888579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS20825 - 877548..878003 (-) 456 WP_274884629.1 Lrp/AsnC family transcriptional regulator -
  PWW29_RS20830 - 878153..879079 (+) 927 WP_274884630.1 DMT family transporter -
  PWW29_RS20835 - 879173..879835 (+) 663 WP_009696231.1 PilZ domain-containing protein -
  PWW29_RS20840 luxQ 879903..882482 (-) 2580 WP_005453581.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWW29_RS20845 luxP 882482..883579 (-) 1098 WP_005453580.1 substrate-binding domain-containing protein Regulator
  PWW29_RS20850 - 883929..884255 (-) 327 WP_017188723.1 GIY-YIG nuclease family protein -
  PWW29_RS20855 - 884252..884905 (-) 654 WP_005453575.1 YceH family protein -
  PWW29_RS20860 - 884999..885202 (-) 204 WP_009696233.1 hypothetical protein -
  PWW29_RS20865 - 885441..885755 (+) 315 WP_005453573.1 DUF496 family protein -
  PWW29_RS20870 - 885879..887216 (+) 1338 WP_029790049.1 MATE family efflux transporter -
  PWW29_RS20875 - 887358..888347 (-) 990 WP_050908253.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41582.03 Da        Isoelectric Point: 6.7059

>NTDB_id=793638 PWW29_RS20845 WP_005453580.1 882482..883579(-) (luxP) [Vibrio harveyi strain fish4]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793638 PWW29_RS20845 WP_005453580.1 882482..883579(-) (luxP) [Vibrio harveyi strain fish4]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGTCCTAATGCGGATATTAAGCAGCAAAGCTTGTCATTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCGAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGTGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGACGTTATGATCAACGGTTGGGGTGGTGGTTCAG
CAGAGCTTGATGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATTGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63