Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   PWW29_RS19470 Genome accession   NZ_CP118583
Coordinates   560374..561555 (+) Length   393 a.a.
NCBI ID   WP_026000191.1    Uniprot ID   A0A1E3E250
Organism   Vibrio harveyi strain fish4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 555374..566555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS19460 - 558079..558567 (+) 489 WP_017819190.1 type II secretion system protein -
  PWW29_RS19465 ylqF 558896..559840 (+) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  PWW29_RS19470 cqsA 560374..561555 (+) 1182 WP_026000191.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  PWW29_RS19475 - 561689..563734 (-) 2046 WP_017819191.1 hybrid sensor histidine kinase/response regulator -
  PWW29_RS19480 - 564021..564638 (+) 618 WP_050940222.1 HAD family phosphatase -
  PWW29_RS19485 - 564713..565261 (-) 549 WP_005447141.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.80 Da        Isoelectric Point: 6.4464

>NTDB_id=793635 PWW29_RS19470 WP_026000191.1 560374..561555(+) (cqsA) [Vibrio harveyi strain fish4]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=793635 PWW29_RS19470 WP_026000191.1 560374..561555(+) (cqsA) [Vibrio harveyi strain fish4]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCACAATCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTACGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCAGTTTATAGCACGATTGGTACCATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCGGGTCTTGTAAAGGCGTTGGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAAAAGCTAGCCAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGCTCGACGGTATTGCCGCAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3E250

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567