Detailed information NTG0793628

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW29_RS16060
• Genome accession: NZ_CP118582
• Coordinates: 3447455..3448438 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3442455..3453438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW29_RS16045	recA	3442987..3444030 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
PWW29_RS16050	pncC	3444232..3444714 (-)	483	WP_017189123.1	nicotinamide-nucleotide amidase	-
PWW29_RS16055	mutS	3444800..3447361 (+)	2562	WP_274883220.1	DNA mismatch repair protein MutS	-
PWW29_RS16060	rpoS	3447455..3448438 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW29_RS16065	-	3448519..3449442 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW29_RS16070	-	3449457..3450083 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW29_RS16075	surE	3450083..3450859 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW29_RS16080	truD	3450859..3451902 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PWW29_RS16085	ispF	3451948..3452424 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW29_RS16090	ispD	3452439..3453149 (-)	711	WP_239923218.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW29_RS16095	ftsB	3453151..3453432 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793628 PWW29_RS16060 WP_005452115.1 3447455..3448438(-) (rpoS) [Vibrio harveyi strain fish4]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793628 PWW29_RS16060 WP_005452115.1 3447455..3448438(-) (rpoS) [Vibrio harveyi strain fish4]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856