Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW29_RS15925 Genome accession   NZ_CP118582
Coordinates   3425056..3425574 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain fish4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420056..3430574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS15900 rimM 3420108..3420656 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW29_RS15905 rpsP 3420685..3420933 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW29_RS15910 ffh 3421144..3422526 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PWW29_RS15915 - 3422740..3423534 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW29_RS15920 - 3423689..3424963 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW29_RS15925 luxS 3425056..3425574 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWW29_RS15930 - 3425661..3426266 (-) 606 WP_029790340.1 hypothetical protein -
  PWW29_RS15935 gshA 3426286..3427854 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=793625 PWW29_RS15925 WP_005448429.1 3425056..3425574(-) (luxS) [Vibrio harveyi strain fish4]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793625 PWW29_RS15925 WP_005448429.1 3425056..3425574(-) (luxS) [Vibrio harveyi strain fish4]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855