Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | PWW29_RS11530 | Genome accession | NZ_CP118582 |
| Coordinates | 2537954..2539375 (+) | Length | 473 a.a. |
| NCBI ID | WP_005445536.1 | Uniprot ID | A0A9X3ML51 |
| Organism | Vibrio harveyi strain fish4 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2516516..2549556 | 2537954..2539375 | within | 0 |
Gene organization within MGE regions
Location: 2516516..2549556
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWW29_RS11425 | - | 2516516..2516959 (-) | 444 | WP_017818016.1 | AAA family ATPase | - |
| PWW29_RS11430 | - | 2517507..2517923 (-) | 417 | WP_009703679.1 | lysozyme inhibitor LprI family protein | - |
| PWW29_RS11435 | - | 2518087..2518443 (-) | 357 | WP_017190311.1 | hypothetical protein | - |
| PWW29_RS11440 | - | 2518497..2519018 (-) | 522 | WP_045452642.1 | hypothetical protein | - |
| PWW29_RS11445 | - | 2519077..2520258 (-) | 1182 | WP_230641663.1 | hypothetical protein | - |
| PWW29_RS11450 | btuD | 2520505..2521272 (-) | 768 | WP_080654225.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| PWW29_RS11455 | btuC | 2521259..2522254 (-) | 996 | WP_009697375.1 | vitamin B12 ABC transporter permease BtuC | - |
| PWW29_RS11460 | - | 2522357..2523385 (-) | 1029 | WP_005439838.1 | succinylglutamate desuccinylase | - |
| PWW29_RS11465 | - | 2523624..2525423 (-) | 1800 | WP_274882932.1 | M3 family oligoendopeptidase | - |
| PWW29_RS11470 | cobC | 2525506..2526120 (-) | 615 | WP_274882933.1 | alpha-ribazole phosphatase | - |
| PWW29_RS11475 | cobU | 2526117..2526665 (-) | 549 | WP_274882934.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| PWW29_RS11480 | - | 2526662..2527468 (-) | 807 | WP_274882935.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| PWW29_RS11485 | cobT | 2527468..2528511 (-) | 1044 | WP_274882936.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| PWW29_RS11490 | - | 2528531..2529142 (-) | 612 | WP_274882937.1 | flavin reductase family protein | - |
| PWW29_RS11495 | - | 2529877..2530572 (+) | 696 | WP_005445533.1 | NAD(P)H-binding protein | - |
| PWW29_RS11500 | - | 2530767..2532140 (+) | 1374 | WP_005445534.1 | L-cystine transporter | - |
| PWW29_RS11505 | - | 2532362..2533051 (+) | 690 | WP_101960465.1 | DUF1826 domain-containing protein | - |
| PWW29_RS11510 | - | 2533835..2534644 (-) | 810 | WP_042606225.1 | LysR family transcriptional regulator | - |
| PWW29_RS11515 | - | 2535038..2535733 (-) | 696 | WP_042606224.1 | aspartate/glutamate racemase family protein | - |
| PWW29_RS11520 | - | 2536327..2536962 (+) | 636 | WP_274882938.1 | LysE family translocator | - |
| PWW29_RS11525 | - | 2537102..2537464 (+) | 363 | WP_050921748.1 | cupin domain-containing protein | - |
| PWW29_RS11530 | sbcB | 2537954..2539375 (+) | 1422 | WP_005445536.1 | exodeoxyribonuclease I | Machinery gene |
| PWW29_RS11535 | - | 2539434..2539808 (+) | 375 | WP_050903240.1 | CidA/LrgA family protein | - |
| PWW29_RS11540 | - | 2539810..2540487 (+) | 678 | WP_005445538.1 | LrgB family protein | - |
| PWW29_RS11545 | cdd | 2540743..2541630 (+) | 888 | WP_005445539.1 | cytidine deaminase | - |
| PWW29_RS11550 | purT | 2541779..2542954 (+) | 1176 | WP_274882939.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PWW29_RS11555 | - | 2543032..2543682 (-) | 651 | WP_274882940.1 | thiopurine S-methyltransferase | - |
| PWW29_RS11560 | - | 2544019..2544792 (+) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| PWW29_RS11565 | ihfA | 2544936..2545232 (-) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| PWW29_RS11570 | - | 2545759..2546637 (+) | 879 | WP_009697364.1 | AEC family transporter | - |
| PWW29_RS11575 | - | 2546820..2547059 (+) | 240 | WP_009697363.1 | hypothetical protein | - |
| PWW29_RS11580 | - | 2547081..2547503 (+) | 423 | WP_274882941.1 | hypothetical protein | - |
| PWW29_RS11585 | - | 2547656..2547937 (+) | 282 | WP_274882942.1 | hypothetical protein | - |
| PWW29_RS11590 | - | 2547915..2548298 (+) | 384 | WP_017817997.1 | hypothetical protein | - |
| PWW29_RS11595 | - | 2548289..2548627 (+) | 339 | WP_274882943.1 | hypothetical protein | - |
| PWW29_RS11600 | - | 2548831..2549556 (+) | 726 | WP_253650502.1 | metallophosphoesterase | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54569.91 Da Isoelectric Point: 4.9808
>NTDB_id=793617 PWW29_RS11530 WP_005445536.1 2537954..2539375(+) (sbcB) [Vibrio harveyi strain fish4]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=793617 PWW29_RS11530 WP_005445536.1 2537954..2539375(+) (sbcB) [Vibrio harveyi strain fish4]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGATTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCGATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGATTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCGATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |