Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PWW32_RS16960 Genome accession   NZ_CP118580
Coordinates   3588854..3589837 (-) Length   327 a.a.
NCBI ID   WP_005452115.1    Uniprot ID   A0A812FCY7
Organism   Vibrio harveyi strain fish3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3583854..3594837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW32_RS16950 - 3584662..3586002 (-) 1341 WP_274882277.1 site-specific integrase -
  PWW32_RS16955 mutS 3586175..3588760 (+) 2586 WP_274882278.1 DNA mismatch repair protein MutS -
  PWW32_RS16960 rpoS 3588854..3589837 (-) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PWW32_RS16965 - 3589918..3590841 (-) 924 WP_009698767.1 peptidoglycan DD-metalloendopeptidase family protein -
  PWW32_RS16970 - 3590856..3591482 (-) 627 WP_005452113.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  PWW32_RS16975 surE 3591482..3592258 (-) 777 WP_009698768.1 5'/3'-nucleotidase SurE -
  PWW32_RS16980 truD 3592258..3593301 (-) 1044 WP_050902432.1 tRNA pseudouridine(13) synthase TruD -
  PWW32_RS16985 ispF 3593347..3593823 (-) 477 WP_009698769.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PWW32_RS16990 ispD 3593838..3594548 (-) 711 WP_038899663.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PWW32_RS16995 ftsB 3594550..3594831 (-) 282 WP_005452106.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37236.10 Da        Isoelectric Point: 4.7232

>NTDB_id=793585 PWW32_RS16960 WP_005452115.1 3588854..3589837(-) (rpoS) [Vibrio harveyi strain fish3]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=793585 PWW32_RS16960 WP_005452115.1 3588854..3589837(-) (rpoS) [Vibrio harveyi strain fish3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.856