Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW32_RS16705 Genome accession   NZ_CP118580
Coordinates   3539982..3540500 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain fish3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3534982..3545500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW32_RS16680 rimM 3535034..3535582 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW32_RS16685 rpsP 3535611..3535859 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW32_RS16690 ffh 3536070..3537452 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PWW32_RS16695 - 3537666..3538460 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW32_RS16700 - 3538615..3539889 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW32_RS16705 luxS 3539982..3540500 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWW32_RS16710 - 3540587..3541192 (-) 606 WP_029790340.1 hypothetical protein -
  PWW32_RS16715 gshA 3541212..3542780 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=793582 PWW32_RS16705 WP_005448429.1 3539982..3540500(-) (luxS) [Vibrio harveyi strain fish3]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793582 PWW32_RS16705 WP_005448429.1 3539982..3540500(-) (luxS) [Vibrio harveyi strain fish3]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855