Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KH172YL63_RS19595 Genome accession   NZ_AP022842
Coordinates   3836572..3837249 (-) Length   225 a.a.
NCBI ID   WP_173107673.1    Uniprot ID   A0A6F8TYL3
Organism   Bacillus sp. KH172YL63     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3831572..3842249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS19565 (KH172YL63_38770) treC 3832144..3833829 (+) 1686 WP_173107668.1 alpha,alpha-phosphotrehalase -
  KH172YL63_RS19570 (KH172YL63_38780) - 3834071..3834454 (+) 384 WP_232066065.1 DUF4176 domain-containing protein -
  KH172YL63_RS19575 (KH172YL63_38790) - 3834466..3834717 (+) 252 WP_173107669.1 hypothetical protein -
  KH172YL63_RS19580 (KH172YL63_38800) - 3834786..3834950 (+) 165 WP_173107670.1 aspartyl-phosphate phosphatase Spo0E family protein -
  KH172YL63_RS19585 (KH172YL63_38810) - 3834982..3835578 (-) 597 WP_173107671.1 hypothetical protein -
  KH172YL63_RS19590 (KH172YL63_38820) treR 3835697..3836416 (+) 720 WP_173107672.1 trehalose operon repressor -
  KH172YL63_RS19595 (KH172YL63_38830) degU 3836572..3837249 (-) 678 WP_173107673.1 response regulator transcription factor Regulator
  KH172YL63_RS19600 (KH172YL63_38840) degS 3837280..3838422 (-) 1143 WP_173107674.1 sensor histidine kinase Regulator
  KH172YL63_RS19605 (KH172YL63_38850) - 3838914..3839546 (+) 633 WP_173107675.1 YigZ family protein -
  KH172YL63_RS19610 (KH172YL63_38860) - 3839634..3840596 (+) 963 WP_173107676.1 LCP family protein -
  KH172YL63_RS19615 (KH172YL63_38870) - 3840673..3841815 (+) 1143 WP_173107677.1 glycosyltransferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25162.61 Da        Isoelectric Point: 5.1606

>NTDB_id=79357 KH172YL63_RS19595 WP_173107673.1 3836572..3837249(-) (degU) [Bacillus sp. KH172YL63]
MATNIVIIDDHQLFREGVKRILEFEPSFNVVAEGDDGSEAMNLVETHEPDVVLMDINMPEINGVEATRELMDKYPNTKVI
ILSIHDDENYVNHALKTGALGYLLKEMDSDALIDAVKIVAEGGSYVHPKVTHNLVAEYKRLANAQNSGGFQQSEVRRPLH
LLTRRECEVLQMLADGKSNRGIGEGLYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKNGWVEVR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=79357 KH172YL63_RS19595 WP_173107673.1 3836572..3837249(-) (degU) [Bacillus sp. KH172YL63]
ATGGCAACAAATATTGTTATCATTGACGATCATCAACTTTTCAGGGAAGGGGTTAAACGAATCCTTGAATTCGAACCTTC
TTTCAACGTAGTGGCAGAAGGTGATGATGGTTCAGAAGCGATGAACCTGGTAGAGACACATGAACCAGATGTTGTCCTCA
TGGATATCAACATGCCTGAGATCAACGGTGTGGAAGCGACGCGTGAATTGATGGATAAGTATCCAAACACGAAAGTAATC
ATCTTATCGATTCACGATGACGAGAACTATGTGAACCATGCGCTGAAGACAGGTGCACTTGGTTATCTGCTGAAGGAGAT
GGATTCAGACGCCCTGATCGACGCAGTGAAAATCGTCGCAGAAGGCGGATCATATGTTCATCCTAAGGTGACCCACAACC
TTGTAGCGGAATACAAGCGCCTGGCAAACGCCCAGAACTCAGGAGGATTCCAGCAATCCGAAGTTCGCCGCCCGCTTCAC
CTATTGACCCGCCGTGAGTGTGAAGTACTGCAGATGCTTGCTGACGGTAAGAGTAACCGGGGGATTGGTGAAGGCTTATA
CATCAGTGAAAAGACGGTTAAAAACCATGTGAGCAATATCCTCCAAAAAATGAACGTGAACGACCGTACCCAGGCAGTTG
TGACTGCGATCAAAAACGGCTGGGTGGAAGTACGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(161-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TYL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

78.667

100

0.787

Multiple sequence alignment