Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWW22_RS18670 Genome accession   NZ_CP118579
Coordinates   448926..450023 (-) Length   365 a.a.
NCBI ID   WP_050902691.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 443926..455023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS18650 - 443992..444447 (-) 456 WP_005453588.1 Lrp/AsnC family transcriptional regulator -
  PWW22_RS18655 - 444597..445523 (+) 927 WP_274882018.1 DMT family transporter -
  PWW22_RS18660 - 445617..446279 (+) 663 WP_047515332.1 PilZ domain-containing protein -
  PWW22_RS18665 luxQ 446347..448926 (-) 2580 WP_005453581.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWW22_RS18670 luxP 448926..450023 (-) 1098 WP_050902691.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PWW22_RS18675 - 450373..450699 (-) 327 WP_017188723.1 GIY-YIG nuclease family protein -
  PWW22_RS18680 - 450696..451349 (-) 654 WP_005453575.1 YceH family protein -
  PWW22_RS18685 - 451443..451646 (-) 204 WP_009696233.1 hypothetical protein -
  PWW22_RS18690 - 451885..452199 (+) 315 WP_005453573.1 DUF496 family protein -
  PWW22_RS18695 - 452323..453660 (+) 1338 WP_274882020.1 MATE family efflux transporter -
  PWW22_RS18700 - 453802..454791 (-) 990 WP_274882021.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41553.98 Da        Isoelectric Point: 6.7059

>NTDB_id=793548 PWW22_RS18670 WP_050902691.1 448926..450023(-) (luxP) [Vibrio harveyi strain fish2]
MKKALLFSLISMVGFSPASHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793548 PWW22_RS18670 WP_050902691.1 448926..450023(-) (luxP) [Vibrio harveyi strain fish2]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGCTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCAAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGATGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTTATGCGTATGAATGATGATACTGGTATCGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63