Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7586_RS24155 Genome accession   NZ_CP131791
Coordinates   5164654..5165187 (-) Length   177 a.a.
NCBI ID   WP_342161677.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S05-249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5159654..5170187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7586_RS24125 (Q7586_24135) - 5160196..5160426 (+) 231 WP_003094285.1 hypothetical protein -
  Q7586_RS24130 (Q7586_24140) - 5160423..5160653 (+) 231 WP_023443257.1 hypothetical protein -
  Q7586_RS24135 (Q7586_24145) - 5160640..5162850 (+) 2211 WP_031636308.1 bacteriophage protein -
  Q7586_RS24140 (Q7586_24150) - 5162847..5163995 (+) 1149 WP_031636306.1 hypothetical protein -
  Q7586_RS24145 (Q7586_24155) - 5163992..5164273 (+) 282 WP_126517318.1 hypothetical protein -
  Q7586_RS24150 (Q7586_24160) - 5164347..5164571 (+) 225 WP_003121473.1 hypothetical protein -
  Q7586_RS24155 (Q7586_24165) pilN 5164654..5165187 (-) 534 WP_342161677.1 PilN domain-containing protein Machinery gene
  Q7586_RS24160 (Q7586_24170) pilM 5165187..5166251 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7586_RS24165 (Q7586_24175) - 5166436..5168907 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20011.23 Da        Isoelectric Point: 10.2984

>NTDB_id=793543 Q7586_RS24155 WP_342161677.1 5164654..5165187(-) (pilN) [Pseudomonas aeruginosa strain 2014S05-249]
MARINLLPWREELREQRKQQFLVILGGVLLVSGALVFLGGQYLNTAIEHQGARNDFLRKEIVVLDARIKEISELRSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVL

Nucleotide


Download         Length: 534 bp        

>NTDB_id=793543 Q7586_RS24155 WP_342161677.1 5164654..5165187(-) (pilN) [Pseudomonas aeruginosa strain 2014S05-249]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTTTTGGTTTCCGGCGCACTGGTGTTTCTTGGTGGCCAATATCTCAACACTGCGATTGAGCATCAGGGCGCGCGCA
ACGACTTCCTGCGCAAGGAGATCGTTGTGCTGGATGCGCGGATCAAGGAAATCAGCGAGTTGAGATCGCGGCGCCAGCAG
TTGCTCGAGCGGATGAAGATCATTCAGGACCTGCAGGGCAACCGCCCGATCATTGGTCGGGTGTTCGACCAACTGGTGCG
CACCTTGCCTGACGGTGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCTGTAG

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

40

98.87

0.395
  pilN Acinetobacter baumannii D1279779

41.875

90.395

0.379
  comN/pilN Acinetobacter baylyi ADP1

39.752

90.96

0.362