Detailed information NTG0793524

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW22_RS12285
• Genome accession: NZ_CP118578
• Coordinates: 2721401..2722384 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2716401..2727384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW22_RS12270	recA	2716933..2717976 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
PWW22_RS12275	pncC	2718178..2718660 (-)	483	WP_050939069.1	nicotinamide-nucleotide amidase	-
PWW22_RS12280	mutS	2718746..2721307 (+)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
PWW22_RS12285	rpoS	2721401..2722384 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW22_RS12290	-	2722465..2723388 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW22_RS12295	-	2723403..2724029 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW22_RS12300	surE	2724029..2724805 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW22_RS12305	truD	2724805..2725848 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PWW22_RS12310	ispF	2725894..2726370 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW22_RS12315	ispD	2726385..2727095 (-)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW22_RS12320	ftsB	2727097..2727378 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793524 PWW22_RS12285 WP_005452115.1 2721401..2722384(-) (rpoS) [Vibrio harveyi strain fish2]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793524 PWW22_RS12285 WP_005452115.1 2721401..2722384(-) (rpoS) [Vibrio harveyi strain fish2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GACGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCCGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAAATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856