Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWW27_RS20535 Genome accession   NZ_CP118577
Coordinates   862472..863569 (-) Length   365 a.a.
NCBI ID   WP_005453580.1    Uniprot ID   A0A9X3RVB5
Organism   Vibrio harveyi strain fish1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 857472..868569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS20515 - 857538..857993 (-) 456 WP_274792973.1 Lrp/AsnC family transcriptional regulator -
  PWW27_RS20520 - 858143..859069 (+) 927 WP_274887058.1 DMT family transporter -
  PWW27_RS20525 - 859163..859825 (+) 663 WP_047515332.1 PilZ domain-containing protein -
  PWW27_RS20530 luxQ 859893..862472 (-) 2580 WP_274887059.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWW27_RS20535 luxP 862472..863569 (-) 1098 WP_005453580.1 substrate-binding domain-containing protein Regulator
  PWW27_RS20540 - 863918..864244 (-) 327 WP_050908252.1 GIY-YIG nuclease family protein -
  PWW27_RS20545 - 864241..864894 (-) 654 WP_274887060.1 YceH family protein -
  PWW27_RS20550 - 864988..865191 (-) 204 WP_009696233.1 hypothetical protein -
  PWW27_RS20555 - 865430..865744 (+) 315 WP_005453573.1 DUF496 family protein -
  PWW27_RS20560 - 865868..867205 (+) 1338 WP_005453572.1 MATE family efflux transporter -
  PWW27_RS20565 - 867347..868336 (-) 990 WP_045489885.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41582.03 Da        Isoelectric Point: 6.7059

>NTDB_id=793501 PWW27_RS20535 WP_005453580.1 862472..863569(-) (luxP) [Vibrio harveyi strain fish1]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793501 PWW27_RS20535 WP_005453580.1 862472..863569(-) (luxP) [Vibrio harveyi strain fish1]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGCCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCAAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGATGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTTATGCGTATGAATGATGATACTGGTATTGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63