Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   PWW27_RS18955 Genome accession   NZ_CP118577
Coordinates   520128..521309 (+) Length   393 a.a.
NCBI ID   WP_110415875.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 515128..526309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS18945 - 517833..518321 (+) 489 WP_017819190.1 type II secretion system protein -
  PWW27_RS18950 ylqF 518650..519594 (+) 945 WP_274886943.1 ribosome biogenesis GTPase YlqF -
  PWW27_RS18955 cqsA 520128..521309 (+) 1182 WP_110415875.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  PWW27_RS18960 - 521443..523488 (-) 2046 WP_069688167.1 hybrid sensor histidine kinase/response regulator -
  PWW27_RS18965 - 523775..524392 (+) 618 WP_110415876.1 HAD family phosphatase -
  PWW27_RS18970 - 524467..525015 (-) 549 WP_005447141.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43664.77 Da        Isoelectric Point: 6.4464

>NTDB_id=793498 PWW27_RS18955 WP_110415875.1 520128..521309(+) (cqsA) [Vibrio harveyi strain fish1]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGGCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=793498 PWW27_RS18955 WP_110415875.1 520128..521309(+) (cqsA) [Vibrio harveyi strain fish1]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCACAATCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTTGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAGGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTTTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGCATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCGGTCTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCTGGTCTTGTGAAAGCGTTAGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAAAAGCTAGCTAAAACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGTTCGACGGTGTTGCCACAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567