Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PWW27_RS15330 Genome accession   NZ_CP118576
Coordinates   3256577..3257584 (-) Length   335 a.a.
NCBI ID   WP_005450580.1    Uniprot ID   K5TI37
Organism   Vibrio harveyi strain fish1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251577..3262584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS15305 rraA 3251799..3252332 (-) 534 WP_274885870.1 ribonuclease E activity regulator RraA -
  PWW27_RS15310 - 3252408..3253325 (-) 918 WP_252044778.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PWW27_RS15315 hslU 3253634..3254965 (-) 1332 WP_009698879.1 HslU--HslV peptidase ATPase subunit -
  PWW27_RS15320 hslV 3254995..3255546 (-) 552 WP_274885871.1 ATP-dependent protease subunit HslV -
  PWW27_RS15325 - 3255866..3256411 (-) 546 WP_005450581.1 SPOR domain-containing protein -
  PWW27_RS15330 cytR 3256577..3257584 (-) 1008 WP_005450580.1 DNA-binding transcriptional regulator CytR Regulator
  PWW27_RS15335 priA 3257791..3259992 (-) 2202 WP_009698876.1 primosomal protein N' -
  PWW27_RS15340 rpmE 3260289..3260510 (+) 222 WP_005450576.1 50S ribosomal protein L31 -
  PWW27_RS15345 rpsJ 3260967..3261278 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  PWW27_RS15350 rplC 3261293..3261922 (+) 630 WP_005435072.1 50S ribosomal protein L3 -
  PWW27_RS15355 rplD 3261940..3262542 (+) 603 WP_005435074.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36918.48 Da        Isoelectric Point: 5.9796

>NTDB_id=793496 PWW27_RS15330 WP_005450580.1 3256577..3257584(-) (cytR) [Vibrio harveyi strain fish1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=793496 PWW27_RS15330 WP_005450580.1 3256577..3257584(-) (cytR) [Vibrio harveyi strain fish1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTTGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCCGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAATTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGCGACACCATGGCGATTGGTGCTATCCAAGAAGCGAAACGTCTTGGTCTGCGTATTCCGCAGGATTT
ATCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGACGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5TI37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.386

99.104

0.955
  cytR Vibrio cholerae C6706

90.663

99.104

0.899