Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KH172YL63_RS15535 Genome accession   NZ_AP022842
Coordinates   3022707..3025070 (-) Length   787 a.a.
NCBI ID   WP_173106955.1    Uniprot ID   A0A6F8TWF7
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3017707..3030070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS15520 (KH172YL63_30850) dtd 3019277..3019717 (-) 441 WP_173106952.1 D-aminoacyl-tRNA deacylase -
  KH172YL63_RS15525 (KH172YL63_30860) - 3019731..3021920 (-) 2190 WP_173106953.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KH172YL63_RS15530 (KH172YL63_30870) - 3022204..3022716 (-) 513 WP_173106954.1 adenine phosphoribosyltransferase -
  KH172YL63_RS15535 (KH172YL63_30880) recJ 3022707..3025070 (-) 2364 WP_173106955.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KH172YL63_RS15540 (KH172YL63_30890) - 3025227..3025562 (-) 336 WP_173106956.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  KH172YL63_RS15545 (KH172YL63_30900) - 3025577..3026503 (-) 927 WP_173106957.1 cation diffusion facilitator family transporter -
  KH172YL63_RS15550 (KH172YL63_30910) secDF 3026603..3028867 (-) 2265 WP_173106958.1 protein translocase subunit SecDF -
  KH172YL63_RS15555 (KH172YL63_30920) - 3028994..3029314 (-) 321 WP_173106959.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88794.03 Da        Isoelectric Point: 4.6724

>NTDB_id=79349 KH172YL63_RS15535 WP_173106955.1 3022707..3025070(-) (recJ) [Bacillus sp. KH172YL63]
MLNSKTRWIMTESDEHKIKELKEQLNVPELVAKLLINRGLDDPEEARDFLFDSGDSFHDPFLFEDMKTATDRIHKAIEAG
ERILVYGDYDADGVSSTSVLMTVLRDLGADAEFYIPNRFSEGYGPNEDAFRWASDEGFTLIITVDTGISAVNEARLAKEL
GMDLIITDHHEPGPELPETYALLHPKVEGTAYPFGELAGVGVAFKLAHALYGELPVHLLDLAAIGTIADLVPLRGENRLL
AKRGLAQLRVTNRLGIKALCKIANASQQEITEETVGFMIAPRINAVGRLGDADPAVELMMTEDSEEAKALAEEIDGLNKE
RQAIVSKMTEEAVEMVEKDFPLDENGVLVIGKEGWNPGVVGIVASRLVDKFYRPTIVLSFDSEKGTAKGSARSIVGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLTDVAELRERLNELASAQLTEEDFIPVTQLDASVTVGEITVESIEKLQLMAPFGM
KNPKPKWIIDNVSIEHYKKIGSSQNHLKLVLQDDGIQLDGVGFGMGELADHMTPFTPASIIGELSINEWNNRKKPQVFLQ
DVKIDQWQLFDVRGIKQFQKWNELIPAERKHIICFNRSTLDKIDLSKEEVTLLEEGADLKDLRTEGTSLVLLDLPTSKPL
LDELLKRGRPHRIYAHFFQEEDHFFSTMPSRDHFKWYYGFLTKRGSFDLNKHGEDLAKYKGWSKETIDFMSQVFFELKFV
TIVNGFISLNPEKTKKDLSESRTYQKKQQQYELENELLYSSYQELKAWFDERIEESVTIEEEVKAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=79349 KH172YL63_RS15535 WP_173106955.1 3022707..3025070(-) (recJ) [Bacillus sp. KH172YL63]
ATGTTAAACTCGAAAACACGTTGGATAATGACAGAATCAGATGAACATAAAATAAAAGAATTAAAAGAGCAATTGAATGT
GCCCGAACTTGTGGCGAAATTATTGATAAACCGGGGCTTGGATGATCCAGAAGAAGCCCGGGATTTTTTATTCGACAGTG
GCGATTCCTTTCACGATCCGTTTTTGTTTGAAGATATGAAAACAGCGACCGACCGGATCCATAAAGCCATCGAGGCAGGG
GAAAGGATTCTCGTTTATGGCGATTACGATGCCGACGGAGTCAGCTCTACTTCTGTCCTGATGACGGTGCTGAGAGATCT
CGGAGCCGACGCTGAGTTCTATATCCCGAACCGGTTCAGCGAAGGATATGGACCGAACGAGGATGCCTTCCGCTGGGCAA
GTGATGAGGGCTTCACGCTTATCATTACAGTGGATACAGGTATTTCAGCTGTGAACGAAGCAAGACTCGCGAAAGAGCTT
GGCATGGACCTGATCATCACCGATCACCATGAACCTGGTCCGGAGCTCCCTGAAACGTATGCACTGCTGCATCCGAAAGT
GGAAGGTACGGCCTATCCTTTCGGTGAGCTTGCAGGTGTAGGGGTGGCGTTTAAACTTGCACATGCCCTGTACGGGGAAC
TGCCTGTTCATTTATTGGATCTTGCGGCCATCGGAACGATTGCGGATCTCGTACCTTTAAGGGGGGAGAACCGCCTGTTG
GCAAAGCGGGGCCTTGCACAGCTTCGTGTCACGAACCGATTGGGGATCAAAGCACTATGTAAAATCGCCAATGCAAGTCA
GCAGGAAATCACAGAAGAAACGGTAGGTTTCATGATCGCTCCCCGCATCAATGCCGTCGGCCGGCTGGGAGACGCAGACC
CAGCCGTTGAACTGATGATGACGGAAGACAGTGAGGAAGCTAAAGCGCTTGCTGAAGAAATTGACGGATTGAATAAGGAA
AGACAGGCGATCGTTTCCAAGATGACTGAAGAAGCGGTTGAAATGGTTGAAAAGGATTTCCCGCTGGATGAAAACGGCGT
CCTCGTCATCGGGAAAGAAGGCTGGAACCCTGGCGTGGTGGGGATCGTTGCATCACGCTTAGTGGATAAGTTCTACCGCC
CGACGATTGTACTCAGTTTCGACAGTGAAAAAGGAACAGCCAAAGGATCCGCCAGAAGCATCGTCGGATTTGATTTGTTT
AAAAATCTTTCCACATGCCGTGATATACTCCCTCATTTCGGAGGACATCCAATGGCTGCGGGAATGACGCTGCAGTTGAC
AGATGTTGCCGAATTAAGGGAGCGGTTGAACGAGCTGGCAAGTGCACAGCTGACGGAAGAGGACTTCATACCGGTCACGC
AGCTTGACGCTTCTGTCACTGTGGGGGAAATCACGGTGGAGTCGATTGAAAAGCTCCAACTCATGGCACCTTTTGGTATG
AAAAATCCTAAGCCAAAATGGATCATAGACAATGTCAGCATCGAGCATTACAAAAAGATCGGTTCTTCACAAAATCATCT
GAAGCTCGTGCTTCAGGATGATGGCATCCAGCTGGATGGCGTCGGTTTTGGAATGGGTGAACTCGCCGACCATATGACGC
CGTTTACACCTGCTTCAATCATTGGGGAGTTATCCATCAATGAATGGAATAACCGCAAGAAGCCCCAGGTGTTCCTTCAG
GATGTAAAGATTGATCAGTGGCAATTATTCGATGTCCGGGGGATCAAGCAATTCCAAAAGTGGAATGAACTCATTCCGGC
AGAGCGTAAACATATCATTTGCTTTAACCGGTCAACATTGGACAAGATTGACCTGTCAAAGGAAGAAGTCACGCTACTGG
AAGAAGGGGCTGACCTGAAAGACCTGAGGACAGAAGGTACAAGCCTAGTACTGCTTGATCTGCCGACTTCCAAACCGCTC
CTCGATGAGCTTTTGAAAAGGGGCAGGCCACATCGCATTTATGCCCATTTCTTCCAGGAGGAAGATCATTTCTTCAGTAC
GATGCCGAGCCGTGATCATTTTAAATGGTACTATGGATTTTTGACGAAACGCGGTTCTTTTGATTTGAACAAACACGGTG
AAGACCTTGCGAAATACAAAGGATGGTCAAAAGAAACAATTGATTTCATGTCACAGGTGTTTTTTGAATTGAAGTTTGTT
ACAATAGTGAATGGATTTATTTCTCTTAATCCTGAGAAAACCAAGAAAGATCTTTCTGAATCTCGAACATACCAGAAGAA
ACAACAACAATACGAGCTTGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGGCTTGGTTTGACGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAAAAGCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(308-439)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

57.014

98.729

0.563

Multiple sequence alignment