Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KH172YL63_RS15425 Genome accession   NZ_AP022842
Coordinates   2999078..3001465 (-) Length   795 a.a.
NCBI ID   WP_173106937.1    Uniprot ID   A0A6F8TW47
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2994078..3006465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS15410 (KH172YL63_30640) - 2996935..2998014 (-) 1080 WP_173106934.1 AI-2E family transporter -
  KH172YL63_RS15415 - 2998461..2998601 (-) 141 WP_232066040.1 YrzQ family protein -
  KH172YL63_RS15420 (KH172YL63_30650) - 2998607..2998792 (-) 186 WP_173106936.1 hypothetical protein -
  KH172YL63_RS15425 (KH172YL63_30660) recD2 2999078..3001465 (-) 2388 WP_173106937.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KH172YL63_RS15430 (KH172YL63_30670) - 3001483..3002154 (-) 672 WP_173106938.1 tetratricopeptide repeat protein -
  KH172YL63_RS15435 (KH172YL63_30680) mnmA 3002364..3003479 (-) 1116 WP_173106939.1 tRNA 2-thiouridine(34) synthase MnmA -
  KH172YL63_RS15440 (KH172YL63_30690) - 3003524..3004666 (-) 1143 WP_173106940.1 cysteine desulfurase family protein -
  KH172YL63_RS15445 (KH172YL63_30700) - 3004680..3005099 (-) 420 WP_173106941.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89672.51 Da        Isoelectric Point: 4.9074

>NTDB_id=79348 KH172YL63_RS15425 WP_173106937.1 2999078..3001465(-) (recD2) [Bacillus sp. KH172YL63]
MSQQDSLKLFGDEEIYIKGRHLVTIFHNEENLYTVVRIRVDETNDSYEDKEAVVTGNFPKIHEDETYTFYGRFKEHPRFG
MQFHAKHFKKEIPQTTQGVVHYLSSDLFKGIGAKTAEKIVEHIGENAISKILENPGLLDEVPKLPKEKAKSIYDTLAEHQ
GLERVMIMLNELGFGPQIAMKVYQAYKDQALEIIQKNPYKLVEDIEGIGFTRADELGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPEKIEYTDISTQLVSLEEESKVVGEGTKVYVPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIKGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGGEFQSDEERSIEGKLLIVDEVSMVDTWLAHQLLKALPDDIQVIFV
GDEDQLPSVGPGQVLKDLLNAEVVPTVRLTDIYRQEEGSSIIELAHSMKRGQVPSDLTKQQKDRSFFPCRTNQISEVVQK
IVENAKKKGYTPKDIQVLAPMYRGPAGIDRLNVLLQEIFNSNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIGE
IVSIFYAKENTEKQDMVIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSK
QFLILCGEMDAFRLGVEREDDFLRKTSLTEKLRHLLEGAGDSEAPIENIPVEEMLMKEDPMIGMEGISPYDFMNA

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=79348 KH172YL63_RS15425 WP_173106937.1 2999078..3001465(-) (recD2) [Bacillus sp. KH172YL63]
TTGAGCCAGCAGGATTCTTTAAAGCTGTTTGGGGATGAAGAAATTTATATTAAAGGACGGCATCTTGTCACGATTTTTCA
TAATGAGGAAAACCTGTATACGGTCGTTCGGATACGAGTGGACGAAACGAATGATTCTTATGAAGATAAGGAAGCTGTCG
TCACCGGGAATTTCCCGAAAATCCATGAAGATGAAACCTACACCTTTTACGGAAGGTTCAAAGAGCATCCGAGATTCGGC
ATGCAGTTTCATGCGAAGCATTTCAAGAAAGAAATCCCCCAGACGACTCAGGGTGTCGTACATTACTTGTCCAGTGATTT
ATTTAAAGGGATCGGAGCGAAAACGGCCGAGAAAATCGTTGAACATATCGGTGAGAACGCCATAAGCAAGATCCTCGAAA
ATCCTGGCCTTCTTGATGAAGTGCCCAAACTTCCGAAAGAAAAGGCAAAGAGCATATATGACACGCTTGCTGAGCATCAG
GGCTTGGAGCGGGTCATGATTATGCTGAACGAACTGGGGTTTGGCCCTCAGATTGCCATGAAAGTGTATCAGGCTTATAA
GGATCAGGCATTGGAAATCATTCAAAAGAATCCTTATAAGCTCGTCGAAGATATTGAAGGGATCGGATTCACCCGTGCTG
ATGAACTCGGATCGAAAATCGGCCTGACAGGAAGCCATCCTGACAGGATAAAGGCAGGGTGCCTATACACTCTGGAACAA
ACCTGTGTCAAACAGGGACATGTGTACCTTGAAGCAGAAGAACTCATCGTAACCGTGAAGGAGCTTCTTGAGAAAAGCCA
GCCGGAGAAAATCGAGTACACAGACATCTCAACACAGCTTGTCTCCTTGGAAGAGGAAAGCAAAGTGGTCGGGGAGGGGA
CGAAGGTGTATGTGCCTTCTCTCTACTTCTCTGAAAAAGGGATTGTGACAAATATTGAGAAGATTTTATCCCAAACCCAA
TATAAAGATCAGTTCCCACAATCTGAATTCCTTTTATCGCTCGGAGCGTTAGAAGACAGACTGGGTGTTCAATATGCACC
GTCCCAAAAGGAAGCGATCGAAACCGCCTTGATGTCCCCGATGCTCCTGTTGACCGGAGGACCGGGAACCGGTAAGACGA
CGGTCATCAAAGGAATCGTCGAGCTTTTTGCAGATCTGCATGGCTGTTCACTCGATCCGAAAGATTACAAAGATGAACCG
TTCCCTGTTTTGTTAACGGCCCCTACAGGACGGGCGGCAAAACGGATGACGGAATCAACGGGCCTCCCGGCGATGACGAT
CCACCGGCTCCTTGGCTGGAACGGTGGGGAGTTCCAGAGTGATGAGGAACGGTCGATCGAAGGGAAGTTACTGATCGTTG
ATGAAGTATCAATGGTTGATACCTGGCTTGCCCATCAATTGCTGAAAGCACTGCCTGACGATATCCAGGTCATTTTTGTC
GGTGATGAAGATCAATTGCCGTCTGTCGGACCGGGTCAGGTGCTAAAGGACCTGTTGAATGCGGAAGTCGTGCCGACGGT
CAGGCTGACGGATATATACAGACAGGAGGAAGGTTCTTCGATCATAGAACTTGCCCATTCCATGAAAAGGGGTCAGGTAC
CGTCGGATTTGACGAAACAGCAAAAAGACCGTTCCTTCTTCCCCTGCAGAACCAATCAGATTTCGGAAGTTGTCCAAAAA
ATCGTTGAGAATGCAAAGAAAAAAGGATACACGCCGAAGGATATCCAGGTGCTTGCGCCCATGTACCGTGGACCTGCAGG
AATCGATCGATTGAATGTACTGCTCCAGGAAATCTTCAATTCAAATGATGGCACCCGGAAAGAAATCGCTTTTGGGGATG
TGAAATACCGGATCGGGGACAAGGTGCTTCAATTGGTCAATCAGCCGGAGAATAATGTGTTCAACGGGGACATCGGCGAG
ATCGTATCGATTTTTTATGCGAAGGAAAATACGGAGAAGCAGGATATGGTTATCGTGTCATATGAAGGAAATGAGGTCAC
CTACACACGGCAGGACCTCATGCAAATCACCCATGCGTACTGCTGCTCGATCCATAAGTCTCAGGGGAGCGAGTTTCCGA
TCGTGATCCTGCCAGTCGTGAAGAGCTATTACCGGATGCTGAGAAGGAATCTTCTTTACACCGCCATCACCAGAAGCAAG
CAGTTCCTCATCCTTTGCGGGGAGATGGACGCTTTCAGGCTTGGCGTTGAGAGGGAAGATGATTTTCTCAGGAAAACGAG
CCTGACTGAAAAATTGAGGCATCTTCTGGAGGGGGCTGGAGATTCAGAAGCTCCGATCGAAAACATTCCAGTCGAAGAAA
TGTTGATGAAAGAGGATCCGATGATCGGGATGGAAGGCATCAGCCCATATGATTTCATGAATGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.169

99.748

0.62

Multiple sequence alignment