Detailed information NTG0793477

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW27_RS10900
• Genome accession: NZ_CP118576
• Coordinates: 2355384..2356367 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2350384..2361367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW27_RS10885	recA	2350916..2351959 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
PWW27_RS10890	pncC	2352161..2352643 (-)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
PWW27_RS10895	mutS	2352729..2355290 (+)	2562	WP_047512941.1	DNA mismatch repair protein MutS	-
PWW27_RS10900	rpoS	2355384..2356367 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW27_RS10905	-	2356448..2357371 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW27_RS10910	-	2357386..2358012 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW27_RS10915	surE	2358012..2358788 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW27_RS10920	truD	2358788..2359831 (-)	1044	WP_110415669.1	tRNA pseudouridine(13) synthase TruD	-
PWW27_RS10925	ispF	2359877..2360353 (-)	477	WP_274885712.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW27_RS10930	ispD	2360368..2361078 (-)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW27_RS10935	ftsB	2361080..2361361 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793477 PWW27_RS10900 WP_005452115.1 2355384..2356367(-) (rpoS) [Vibrio harveyi strain fish1]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793477 PWW27_RS10900 WP_005452115.1 2355384..2356367(-) (rpoS) [Vibrio harveyi strain fish1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GACGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGACATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856