Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW27_RS10770 Genome accession   NZ_CP118576
Coordinates   2333119..2333637 (-) Length   172 a.a.
NCBI ID   WP_017189128.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328119..2338637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS10745 rimM 2328171..2328719 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW27_RS10750 rpsP 2328748..2328996 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW27_RS10755 ffh 2329207..2330589 (-) 1383 WP_110415386.1 signal recognition particle protein -
  PWW27_RS10760 - 2330803..2331597 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW27_RS10765 - 2331752..2333026 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW27_RS10770 luxS 2333119..2333637 (-) 519 WP_017189128.1 S-ribosylhomocysteine lyase Regulator
  PWW27_RS10775 - 2333724..2334287 (-) 564 WP_005448430.1 hypothetical protein -
  PWW27_RS10780 gshA 2334349..2335917 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19053.86 Da        Isoelectric Point: 5.2440

>NTDB_id=793474 PWW27_RS10770 WP_017189128.1 2333119..2333637(-) (luxS) [Vibrio harveyi strain fish1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILKAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793474 PWW27_RS10770 WP_017189128.1 2333119..2333637(-) (luxS) [Vibrio harveyi strain fish1]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATTGCGAAAAACATTCTAAAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855