Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KH172YL63_RS15070 Genome accession   NZ_AP022842
Coordinates   2932341..2933093 (-) Length   250 a.a.
NCBI ID   WP_173106877.1    Uniprot ID   A0A6F8TVC2
Organism   Bacillus sp. KH172YL63     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2927341..2938093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS15060 (KH172YL63_29920) - 2928088..2928720 (-) 633 WP_173106875.1 helix-turn-helix transcriptional regulator -
  KH172YL63_RS15065 (KH172YL63_29930) - 2929171..2930544 (+) 1374 WP_173106876.1 glycine--tRNA ligase -
  KH172YL63_RS15070 (KH172YL63_29940) recO 2932341..2933093 (-) 753 WP_173106877.1 DNA repair protein RecO Machinery gene
  KH172YL63_RS15075 (KH172YL63_29950) - 2933139..2933282 (-) 144 WP_173106878.1 YqzL family protein -
  KH172YL63_RS15080 (KH172YL63_29960) era 2933388..2934308 (-) 921 WP_173106879.1 GTPase Era -
  KH172YL63_RS15085 (KH172YL63_29970) - 2934301..2934699 (-) 399 WP_173106880.1 cytidine deaminase -
  KH172YL63_RS15090 (KH172YL63_29980) - 2934937..2935329 (-) 393 WP_232066039.1 diacylglycerol kinase family protein -
  KH172YL63_RS15095 (KH172YL63_29990) ybeY 2935304..2935777 (-) 474 WP_173106881.1 rRNA maturation RNase YbeY -
  KH172YL63_RS15100 (KH172YL63_30000) - 2935780..2937939 (-) 2160 WP_173106882.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28998.46 Da        Isoelectric Point: 7.7183

>NTDB_id=79346 KH172YL63_RS15070 WP_173106877.1 2932341..2933093(-) (recO) [Bacillus sp. KH172YL63]
MLQKCEGIVIRTNHYGESNKVVTIYTREFGKIGLMARGAKKPNSRLSAISQLFTYGYFVFIKGSGLGTLQQGEMAESLRH
VREDLFKTAYATYIVDLLDKSTEDRKPNPFLFELLYKTLSYLNEDYDPEILMHIFEMKMLPVMGLYPHLNGCAVCGETDG
EFSFSFKENGFICHRCLNEDPHHLPISQGTVKLLRLFYYFDINRLGNISVKDETKLQLKRVIRTYYDENSGLTLKSRRFL
DQMDNMKDLF

Nucleotide


Download         Length: 753 bp        

>NTDB_id=79346 KH172YL63_RS15070 WP_173106877.1 2932341..2933093(-) (recO) [Bacillus sp. KH172YL63]
ATGCTACAGAAGTGTGAAGGAATCGTCATTCGAACGAATCACTACGGTGAATCGAATAAAGTTGTCACCATATATACACG
GGAATTTGGAAAGATTGGATTGATGGCTAGAGGGGCGAAAAAACCTAATAGCCGTCTATCCGCCATTTCACAATTGTTTA
CATATGGGTATTTCGTTTTTATTAAAGGAAGCGGCCTCGGCACCCTTCAACAGGGAGAAATGGCCGAATCGCTCAGACAT
GTAAGGGAAGACTTGTTCAAGACGGCCTATGCGACATACATCGTCGACCTCCTCGATAAATCGACGGAGGACCGCAAGCC
GAACCCATTCCTGTTTGAATTATTATATAAAACCCTTTCCTACCTAAATGAAGACTATGATCCCGAAATCCTGATGCATA
TATTCGAAATGAAGATGCTCCCCGTCATGGGGCTCTATCCTCATCTCAATGGATGTGCAGTTTGCGGGGAGACCGATGGC
GAATTCTCCTTCTCATTCAAAGAAAATGGATTCATCTGTCATCGCTGTCTAAATGAAGATCCTCATCATCTTCCGATATC
CCAGGGCACTGTAAAACTGCTCAGGCTCTTTTATTATTTCGATATCAACCGCCTCGGAAACATATCGGTGAAAGATGAAA
CAAAACTTCAATTGAAGCGGGTAATCAGGACTTATTACGATGAAAACTCAGGTCTAACCCTAAAATCCAGAAGATTCCTT
GATCAAATGGATAACATGAAGGACTTATTCTAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TVC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

63.855

99.6

0.636

Multiple sequence alignment