Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   QMM33_RS09815 Genome accession   NZ_AP025940
Coordinates   1916926..1917420 (-) Length   164 a.a.
NCBI ID   WP_224757304.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911926..1922420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS09785 (PC0204_18790) - 1912226..1913101 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  QMM33_RS09790 (PC0204_18800) pstC 1913219..1914082 (+) 864 WP_000165892.1 phosphate ABC transporter permease subunit PstC -
  QMM33_RS09795 (PC0204_18810) pstA 1914075..1914890 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  QMM33_RS09800 (PC0204_18820) pstB 1914892..1915644 (+) 753 WP_000536447.1 phosphate ABC transporter ATP-binding protein PstB -
  QMM33_RS09805 (PC0204_18830) phoU 1915659..1916309 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  QMM33_RS09810 (PC0204_18840) - 1916377..1916811 (+) 435 Protein_1897 transposase -
  QMM33_RS09815 (PC0204_18850) comR 1916926..1917420 (-) 495 WP_224757304.1 helix-turn-helix transcriptional regulator Regulator
  QMM33_RS09820 (PC0204_18860) - 1917578..1918594 (+) 1017 WP_000415108.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  QMM33_RS09825 (PC0204_18870) galU 1918616..1919515 (+) 900 WP_000202229.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMM33_RS09830 (PC0204_18880) - 1919582..1920259 (-) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  QMM33_RS09835 (PC0204_18890) - 1920243..1920782 (-) 540 WP_050204952.1 5-formyltetrahydrofolate cyclo-ligase -
  QMM33_RS09840 (PC0204_18900) - 1920794..1921924 (-) 1131 WP_000885100.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19810.88 Da        Isoelectric Point: 4.8839

>NTDB_id=79342 QMM33_RS09815 WP_224757304.1 1916926..1917420(-) (comR) [Streptococcus pneumoniae strain PZ900700204]
MIQYMLIIEVNNSGSSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPILTKLKYIAERLEVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETITQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=79342 QMM33_RS09815 WP_224757304.1 1916926..1917420(-) (comR) [Streptococcus pneumoniae strain PZ900700204]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAAGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAATACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCACCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55.833

73.171

0.409
  comR Streptococcus pyogenes MGAS315

54.167

73.171

0.396
  comR Streptococcus mutans UA159

52.5

73.171

0.384

Multiple sequence alignment