Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KH172YL63_RS13260 Genome accession   NZ_AP022842
Coordinates   2594984..2595592 (+) Length   202 a.a.
NCBI ID   WP_173106551.1    Uniprot ID   A0A6F8TUU8
Organism   Bacillus sp. KH172YL63     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2589984..2600592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS13230 (KH172YL63_26200) - 2591159..2591608 (+) 450 WP_232066025.1 Hsp20/alpha crystallin family protein -
  KH172YL63_RS13235 (KH172YL63_26210) - 2591814..2592320 (-) 507 WP_232066026.1 YppG family protein -
  KH172YL63_RS13240 (KH172YL63_26220) yppF 2592532..2592714 (+) 183 WP_173106547.1 YppF family protein -
  KH172YL63_RS13245 (KH172YL63_26230) - 2592812..2593168 (-) 357 WP_173106548.1 YppE family protein -
  KH172YL63_RS13250 (KH172YL63_26240) - 2593240..2593494 (-) 255 WP_173106549.1 hypothetical protein -
  KH172YL63_RS13255 (KH172YL63_26250) - 2593856..2594869 (-) 1014 WP_173106550.1 DUF2515 family protein -
  KH172YL63_RS13260 (KH172YL63_26260) recU 2594984..2595592 (+) 609 WP_173106551.1 Holliday junction resolvase RecU Machinery gene
  KH172YL63_RS13265 (KH172YL63_26270) - 2595697..2598387 (+) 2691 WP_173106552.1 PBP1A family penicillin-binding protein -
  KH172YL63_RS13270 (KH172YL63_26280) ltrA 2598461..2599724 (-) 1264 Protein_2592 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23733.25 Da        Isoelectric Point: 9.7530

>NTDB_id=79342 KH172YL63_RS13260 WP_173106551.1 2594984..2595592(+) (recU) [Bacillus sp. KH172YL63]
MKFHYPNGKKYVEATLPSKKPRAKTKQVSYSNRGMTLEEDINETNQYYLTFHKAVIHKKPTPVQIVDVHYPSRSAAVIKE
AYFKQPSTTDYNGVYKGRYIDFEAKETKNKTSFPLKNFHEHQIRHMEAVDAQEGITFVLIRFSVTEDVFLLPYGPLRYFW
DRMLEGGRKSITRDELEEKGILIPLGLHPRVDYLKIVHQLYF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=79342 KH172YL63_RS13260 WP_173106551.1 2594984..2595592(+) (recU) [Bacillus sp. KH172YL63]
ATGAAATTCCATTACCCGAATGGAAAGAAATATGTGGAAGCAACACTACCCTCAAAAAAACCAAGAGCTAAAACGAAACA
GGTATCGTACAGCAATAGAGGGATGACATTAGAAGAAGATATCAATGAAACGAATCAGTATTATTTGACCTTTCACAAAG
CGGTCATCCATAAAAAACCGACGCCTGTTCAAATCGTGGATGTCCATTACCCTTCAAGGAGTGCTGCCGTCATCAAGGAA
GCCTATTTCAAACAGCCTTCCACTACTGACTACAATGGCGTGTACAAGGGAAGATACATTGATTTTGAAGCGAAGGAAAC
GAAGAATAAAACTTCTTTTCCACTTAAAAATTTTCACGAGCACCAAATCCGCCACATGGAAGCGGTCGATGCACAAGAAG
GGATTACGTTTGTGTTAATCCGCTTTTCTGTCACTGAAGACGTTTTCCTTCTCCCATACGGTCCTTTAAGGTATTTTTGG
GACCGGATGCTTGAAGGAGGAAGGAAATCCATCACACGGGATGAACTGGAGGAGAAAGGGATCCTGATTCCGCTCGGCCT
GCATCCGAGGGTCGATTATTTAAAAATAGTCCATCAGTTATATTTTTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TUU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

65.657

98.02

0.644

Multiple sequence alignment