Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OP485_RS26195 Genome accession   NZ_CP118566
Coordinates   5594126..5594683 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_HN005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5589126..5599683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP485_RS26175 (OP485_26165) pilR 5590402..5591739 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  OP485_RS26180 (OP485_26170) thiO 5591785..5592879 (-) 1095 WP_346363995.1 glycine oxidase ThiO -
  OP485_RS26185 (OP485_26175) - 5593014..5593523 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  OP485_RS26190 (OP485_26180) - 5593629..5594135 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  OP485_RS26195 (OP485_26185) pilV 5594126..5594683 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OP485_RS26200 (OP485_26190) pilW 5594680..5595504 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  OP485_RS26205 (OP485_26195) pilX 5595501..5596088 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  OP485_RS26210 (OP485_26200) pilY1 5596100..5599585 (+) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=793417 OP485_RS26195 WP_003119423.1 5594126..5594683(+) (pilV) [Pseudomonas aeruginosa strain PA_HN005]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=793417 OP485_RS26195 WP_003119423.1 5594126..5594683(+) (pilV) [Pseudomonas aeruginosa strain PA_HN005]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995