Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OPY27_RS24760 Genome accession   NZ_CP118565
Coordinates   5269624..5270181 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_HN004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5264624..5275181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPY27_RS24740 (OPY27_24730) pilR 5265900..5267237 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  OPY27_RS24745 (OPY27_24735) thiO 5267283..5268377 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  OPY27_RS24750 (OPY27_24740) - 5268512..5269021 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  OPY27_RS24755 (OPY27_24745) - 5269127..5269633 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  OPY27_RS24760 (OPY27_24750) pilV 5269624..5270181 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OPY27_RS24765 (OPY27_24755) pilW 5270178..5271002 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  OPY27_RS24770 (OPY27_24760) pilX 5270999..5271586 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  OPY27_RS24775 (OPY27_24765) pilY1 5271598..5275089 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=793382 OPY27_RS24760 WP_003119423.1 5269624..5270181(+) (pilV) [Pseudomonas aeruginosa strain PA_HN004]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=793382 OPY27_RS24760 WP_003119423.1 5269624..5270181(+) (pilV) [Pseudomonas aeruginosa strain PA_HN004]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995