Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PWC21_RS23340 Genome accession   NZ_CP118545
Coordinates   4495228..4497585 (-) Length   785 a.a.
NCBI ID   WP_274863015.1    Uniprot ID   -
Organism   Priestia aryabhattai strain G5.MM8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4490228..4502585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWC21_RS23320 (PWC21_23320) alaS 4490538..4493171 (-) 2634 WP_099331303.1 alanine--tRNA ligase -
  PWC21_RS23325 (PWC21_23325) - 4493560..4494621 (-) 1062 WP_028411681.1 AI-2E family transporter -
  PWC21_RS23330 (PWC21_23330) - 4494735..4494869 (-) 135 WP_013059291.1 YrzQ family protein -
  PWC21_RS23335 (PWC21_23335) - 4494895..4495086 (-) 192 WP_013059292.1 hypothetical protein -
  PWC21_RS23340 (PWC21_23340) recD2 4495228..4497585 (-) 2358 WP_274863015.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PWC21_RS23345 (PWC21_23345) - 4497610..4498269 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  PWC21_RS23350 (PWC21_23350) mnmA 4498427..4499539 (-) 1113 WP_028411683.1 tRNA 2-thiouridine(34) synthase MnmA -
  PWC21_RS23355 (PWC21_23355) - 4499646..4500788 (-) 1143 WP_028411684.1 cysteine desulfurase family protein -
  PWC21_RS23360 (PWC21_23360) cymR 4500812..4501228 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88860.41 Da        Isoelectric Point: 5.1108

>NTDB_id=793226 PWC21_RS23340 WP_274863015.1 4495228..4497585(-) (recD2) [Priestia aryabhattai strain G5.MM8]
MNQELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQMQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSIRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=793226 PWC21_RS23340 WP_274863015.1 4495228..4497585(-) (recD2) [Priestia aryabhattai strain G5.MM8]
ATGAACCAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTTTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTTAATGAAGATGAAGTATACACATTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAATTTCATGTTGAGCAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCCGTGTTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAGGCTTTAGTAACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAACCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGTAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCCCAAATGCAATAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTTTAGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACTGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCCCCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACCGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAATTATTGATTG
TGGATGAAGTATCGATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGGTCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCAAGGACAGCACATCACGAATGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAACCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCGCAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGT
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGGAATGAAGACAGCATTCGACAAAC
GAATTTACAGCCCCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.683

99.618

0.634