Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PWC21_RS16600 Genome accession   NZ_CP118545
Coordinates   3269077..3269499 (+) Length   140 a.a.
NCBI ID   WP_047750471.1    Uniprot ID   -
Organism   Priestia aryabhattai strain G5.MM8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3264077..3274499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWC21_RS16575 (PWC21_16575) - 3264429..3265262 (-) 834 WP_028414491.1 AraC family ligand binding domain-containing protein -
  PWC21_RS16580 (PWC21_16580) - 3265465..3266286 (+) 822 WP_047750474.1 sensor histidine kinase -
  PWC21_RS16585 (PWC21_16585) - 3266287..3266928 (+) 642 WP_033580507.1 response regulator -
  PWC21_RS16590 (PWC21_16590) - 3267063..3268442 (+) 1380 WP_274862588.1 PepSY-associated TM helix domain-containing protein -
  PWC21_RS16595 (PWC21_16595) - 3268472..3268936 (+) 465 WP_047750472.1 FixH family protein -
  PWC21_RS16600 (PWC21_16600) nucA/comI 3269077..3269499 (+) 423 WP_047750471.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PWC21_RS16605 (PWC21_16605) - 3269654..3270007 (+) 354 WP_223272376.1 DUF1516 family protein -
  PWC21_RS16610 (PWC21_16610) - 3270047..3270640 (-) 594 WP_033580502.1 hypothetical protein -
  PWC21_RS16615 (PWC21_16615) - 3270793..3271449 (-) 657 WP_047751820.1 TetR/AcrR family transcriptional regulator -
  PWC21_RS16620 (PWC21_16620) - 3271472..3272749 (-) 1278 WP_221817832.1 glycosyltransferase -
  PWC21_RS16625 (PWC21_16625) - 3273084..3273569 (-) 486 WP_033580500.1 hypothetical protein -
  PWC21_RS16630 (PWC21_16630) fsa 3273648..3274316 (-) 669 WP_013083988.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15299.15 Da        Isoelectric Point: 4.4990

>NTDB_id=793212 PWC21_RS16600 WP_047750471.1 3269077..3269499(+) (nucA/comI) [Priestia aryabhattai strain G5.MM8]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIATKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=793212 PWC21_RS16600 WP_047750471.1 3269077..3269499(+) (nucA/comI) [Priestia aryabhattai strain G5.MM8]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATCCCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTGCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGCGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5