Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PSE45_RS17015 Genome accession   NZ_CP118544
Coordinates   3710551..3710997 (+) Length   148 a.a.
NCBI ID   WP_173599667.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain BCP-09     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3705551..3715997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE45_RS17000 (PSE45_17000) - 3706180..3707067 (+) 888 WP_173599670.1 DMT family transporter -
  PSE45_RS17005 (PSE45_17005) - 3707218..3708816 (-) 1599 WP_217021426.1 amidohydrolase -
  PSE45_RS17010 (PSE45_17010) - 3709032..3710348 (+) 1317 WP_217021428.1 MFS transporter -
  PSE45_RS17015 (PSE45_17015) nucA/comI 3710551..3710997 (+) 447 WP_173599667.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PSE45_RS17020 (PSE45_17020) - 3711049..3712785 (-) 1737 WP_217021431.1 ABC transporter ATP-binding protein -
  PSE45_RS17025 (PSE45_17025) - 3712754..3714622 (-) 1869 WP_122965104.1 ABC transporter ATP-binding protein -
  PSE45_RS17030 (PSE45_17030) - 3714664..3715473 (-) 810 WP_122965103.1 energy-coupling factor transporter transmembrane component T family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16491.68 Da        Isoelectric Point: 8.4836

>NTDB_id=793166 PSE45_RS17015 WP_173599667.1 3710551..3710997(+) (nucA/comI) [Brevibacillus parabrevis strain BCP-09]
MRIKRILFTLAVLIGIGLFSLLTEQQNSQTTNTSVQADVVLTFPRERYPETAEHIRSAIEKGQSAVCTIDRKSADKHRED
SLRGIPTKRGYDRDEWPMAMCKEGGKGADIAYISPSDNRGAGSWIANQLEKYPDGTRVQIVIGDQPAR

Nucleotide


Download         Length: 447 bp        

>NTDB_id=793166 PSE45_RS17015 WP_173599667.1 3710551..3710997(+) (nucA/comI) [Brevibacillus parabrevis strain BCP-09]
GTGCGAATCAAACGAATTTTGTTCACCCTCGCTGTTTTGATCGGGATCGGATTGTTCAGTCTGTTAACCGAGCAACAGAA
CAGCCAGACCACAAACACGTCTGTGCAAGCCGATGTCGTTCTGACCTTTCCCCGCGAGCGCTATCCCGAGACGGCAGAGC
ACATTCGCTCTGCCATCGAAAAAGGCCAGTCTGCTGTCTGCACCATCGACCGCAAATCGGCGGACAAGCACCGCGAAGAT
TCCTTGCGCGGCATCCCGACCAAACGCGGCTACGATCGCGACGAATGGCCGATGGCAATGTGCAAGGAAGGCGGCAAGGG
AGCAGATATCGCTTATATTTCCCCTTCCGACAACCGCGGGGCAGGTTCGTGGATCGCCAACCAGCTCGAAAAGTACCCGG
ATGGCACGCGCGTGCAAATCGTTATCGGCGATCAGCCTGCCCGCTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.923

87.838

0.5