Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PSE45_RS11610 Genome accession   NZ_CP118544
Coordinates   2377219..2378943 (+) Length   574 a.a.
NCBI ID   WP_173595770.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain BCP-09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372219..2383943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE45_RS11590 (PSE45_11590) dxs 2373078..2374961 (+) 1884 WP_173599153.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PSE45_RS11595 (PSE45_11595) - 2374958..2375776 (+) 819 WP_122965849.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  PSE45_RS11600 (PSE45_11600) - 2375890..2376747 (+) 858 WP_173595769.1 NAD(+)/NADH kinase -
  PSE45_RS11605 (PSE45_11605) ahrC 2376753..2377202 (+) 450 WP_122965851.1 transcriptional regulator AhrC/ArgR -
  PSE45_RS11610 (PSE45_11610) recN 2377219..2378943 (+) 1725 WP_173595770.1 DNA repair protein RecN Machinery gene
  PSE45_RS11615 (PSE45_11615) spoIVB 2379108..2380442 (+) 1335 WP_063226844.1 SpoIVB peptidase -
  PSE45_RS11620 (PSE45_11620) spo0A 2380781..2381569 (+) 789 WP_005827306.1 sporulation transcription factor Spo0A -
  PSE45_RS11625 (PSE45_11625) - 2381979..2382305 (+) 327 WP_274875219.1 hypothetical protein -
  PSE45_RS11635 (PSE45_11635) - 2382895..2383122 (+) 228 WP_122965855.1 hypothetical protein -
  PSE45_RS11640 (PSE45_11640) - 2383217..2383795 (+) 579 WP_122965856.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64561.80 Da        Isoelectric Point: 4.9047

>NTDB_id=793158 PSE45_RS11610 WP_173595770.1 2377219..2378943(+) (recN) [Brevibacillus parabrevis strain BCP-09]
MLVELSIRNFAIIKSVTVSFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGELRAEVEGLFELPAGHPALAVC
ASVGVQVEQDGMLVVRRDISNQGKSIIRLNGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEVALGAAK
QEYGKLYSSYRKTRQDLERMARNERELVQRIDLLQYQLDEIESASLTPGEDEKLLQQRKKWMNIEKVYATVQDAYRSLHG
DQKGMDWLGHAMGELERGVIYEEQLAPILETVQSAYYQIEDVVHKLRQLSYHLDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATISDELDEMHHYEDRLQQVEKRLQELAADLAVEALELSVIRQECAAKLAQEIEQQLKELHMERARFAIDVR
QTPDEEGVEIEGIKRLVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASMADAHFLIKKEMSENETKTIVTKLSEEETVTELARMLSGAEVTAKTEEHA
REMILLGRERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=793158 PSE45_RS11610 WP_173595770.1 2377219..2378943(+) (recN) [Brevibacillus parabrevis strain BCP-09]
ATGCTAGTGGAACTCTCTATCCGAAATTTTGCCATCATTAAATCGGTTACGGTCTCGTTTCAACGCGGGTTGAACATCCT
GACAGGGGAAACCGGCGCGGGAAAATCGATCATCATCGACGCGCTCGGACTGCTGCTCGGTGGCCGTGCGTCCGCAGATT
TTGTGCGCTACGGCGAGCTGCGCGCAGAGGTGGAAGGGCTGTTTGAACTGCCTGCGGGCCATCCTGCGCTTGCGGTGTGC
GCCAGCGTAGGTGTGCAAGTGGAGCAAGACGGCATGCTCGTCGTCCGCCGGGACATTTCCAACCAGGGAAAAAGCATTAT
TCGTCTGAACGGCCAGCTGGTGACGCTTGCCATGCTGCGCGAGCTTGGGCCTTGGCTGGTCACGGTTCACGGCCAGCACG
ACACGCACATGCTGATGCAGGCGGACAAGCATATCAACTGGCTGGATGCGTACGGCGAAGTTGCTTTGGGAGCGGCGAAG
CAGGAATACGGGAAACTGTACTCCTCCTACCGGAAAACGCGACAGGATCTCGAACGGATGGCCCGCAACGAACGCGAGCT
GGTACAGCGCATAGACCTTTTGCAATACCAGCTTGACGAAATCGAAAGCGCTTCGCTTACTCCGGGTGAGGACGAGAAGC
TGCTGCAGCAGCGCAAAAAGTGGATGAACATTGAGAAGGTTTACGCGACCGTCCAGGACGCCTACCGCTCGCTGCACGGC
GATCAGAAGGGCATGGATTGGCTCGGTCACGCCATGGGAGAGCTGGAGCGCGGCGTGATCTACGAGGAGCAGCTTGCGCC
GATTTTGGAGACGGTGCAGTCTGCGTATTACCAGATTGAGGACGTGGTGCACAAGCTGCGCCAGCTTTCGTACCATCTGG
ACTTTGAACCGGAGCAGCTGGCAGAAGTAGAGCGCAGGCTCGACCAGATTCAGTCCTTGAAGCGCAAGTACGGAAAAAGC
GTGGATGACATTTTGGAGTATGCAGCGACCATCTCCGACGAGCTGGACGAAATGCATCACTACGAGGATCGGTTGCAACA
GGTGGAAAAACGGTTGCAGGAGCTGGCGGCTGATTTGGCTGTCGAGGCGCTGGAGCTGTCCGTCATTCGTCAGGAATGCG
CCGCGAAGCTCGCGCAGGAAATCGAGCAGCAGCTGAAAGAACTGCATATGGAACGGGCGCGTTTTGCCATCGACGTCAGA
CAAACCCCTGATGAAGAAGGCGTTGAAATCGAAGGCATCAAGCGGCTCGTGGATGCGAACGGCATGGACCAGATCGAGTT
TTTGATTTCGCCAAACCCGGGGGAACCGCTGCGGCCGTTAGCGAAAATCGCTTCTGGCGGAGAGCTGTCCCGCGTCATGC
TGGCGATCAAGACGATCCTGGCTGGAACCGATCAGGTCGAGACGCTGATTTTTGACGAGGTAGACACGGGAGTCAGCGGC
AGAGCGGCCCAGGCGATTGCGGAAAAGCTCGCTCGCGTCGCGCAAAAACGGCAAGTGCTGTGCATTACGCATTTGCCGCA
GGTAGCTTCCATGGCGGATGCCCATTTTCTGATCAAAAAGGAAATGAGCGAAAACGAGACGAAAACAATCGTGACGAAGC
TGTCGGAAGAAGAGACCGTGACAGAGCTTGCCCGCATGCTGAGCGGGGCAGAAGTAACGGCAAAAACAGAAGAGCACGCG
CGGGAAATGATTTTGCTCGGGCGGGAAAGAAAGGCTGTCAACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.735

98.78

0.491