NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	Q7590_RS00145	Genome accession	NZ_CP131784
Coordinates	34199..35224 (+)	Length	341 a.a.
NCBI ID	WP_003097294.1	Uniprot ID	A0A0H2ZJL6
Organism	Pseudomonas aeruginosa strain 2016S01-136
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29199..40224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7590_RS00120 (Q7590_00120)	-	29388..29705 (-)	318	WP_003097288.1	tetratricopeptide repeat protein	-
Q7590_RS00125 (Q7590_00125)	trkA	29854..31227 (-)	1374	WP_003111375.1	Trk system potassium transporter TrkA	-
Q7590_RS00130 (Q7590_00130)	rsmB	31254..32558 (-)	1305	WP_023095007.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
Q7590_RS00135 (Q7590_00135)	fmt	32555..33499 (-)	945	WP_023095008.1	methionyl-tRNA formyltransferase	-
Q7590_RS00140 (Q7590_00140)	def	33554..34060 (-)	507	WP_003107059.1	peptide deformylase	-
Q7590_RS00145 (Q7590_00145)	tsaP	34199..35224 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
Q7590_RS00150 (Q7590_00150)	dprA	35359..36447 (+)	1089	WP_015502109.1	DNA-processing protein DprA	Machinery gene
Q7590_RS00155 (Q7590_00155)	-	36488..37045 (+)	558	WP_003097300.1	Sua5/YciO/YrdC/YwlC family protein	-
Q7590_RS00160 (Q7590_00160)	-	37055..38032 (-)	978	WP_033991581.1	quinone oxidoreductase	-
Q7590_RS00165 (Q7590_00165)	hemF	38223..39140 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
Q7590_RS00170 (Q7590_00170)	aroE	39198..40022 (+)	825	WP_003097314.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 341 a.a. Molecular weight: 37586.01 Da Isoelectric Point: 9.3358

                                >NTDB_id=793066 Q7590_RS00145 WP_003097294.1 34199..35224(+) (tsaP) [Pseudomonas aeruginosa strain 2016S01-136]

MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV

DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA

RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP

GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL

SYALVLMASRPLSVTDRVQNP

Nucleotide

Download Length: 1026 bp

                                >NTDB_id=793066 Q7590_RS00145 WP_003097294.1 34199..35224(+) (tsaP) [Pseudomonas aeruginosa strain 2016S01-136]

ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA

TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC

CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC

GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC

GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA

AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC

CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA

AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA

CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC

GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT

CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG

ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG

AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393

Detailed information NTG0793066