Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWS06_RS27045 Genome accession   NZ_CP118533
Coordinates   2201072..2202169 (+) Length   365 a.a.
NCBI ID   WP_274791106.1    Uniprot ID   -
Organism   Vibrio harveyi strain 160-19     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2196072..2207169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS06_RS27015 - 2196305..2197294 (+) 990 WP_045489885.1 Gfo/Idh/MocA family oxidoreductase -
  PWS06_RS27020 - 2197436..2198773 (-) 1338 WP_005453572.1 MATE family efflux transporter -
  PWS06_RS27025 - 2198897..2199211 (-) 315 WP_005453573.1 DUF496 family protein -
  PWS06_RS27030 - 2199450..2199653 (+) 204 WP_009696233.1 hypothetical protein -
  PWS06_RS27035 - 2199747..2200400 (+) 654 WP_005453575.1 YceH family protein -
  PWS06_RS27040 - 2200397..2200723 (+) 327 WP_005453578.1 GIY-YIG nuclease family protein -
  PWS06_RS27045 luxP 2201072..2202169 (+) 1098 WP_274791106.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PWS06_RS27050 luxQ 2202169..2204748 (+) 2580 WP_274791107.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWS06_RS27055 - 2204816..2205478 (-) 663 WP_274791108.1 PilZ domain-containing protein -
  PWS06_RS27060 - 2205572..2206498 (-) 927 WP_274791109.1 DMT family transporter -
  PWS06_RS27065 - 2206648..2207103 (+) 456 WP_005453588.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41610.05 Da        Isoelectric Point: 6.7059

>NTDB_id=793004 PWS06_RS27045 WP_274791106.1 2201072..2202169(+) (luxP) [Vibrio harveyi strain 160-19]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKRRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793004 PWS06_RS27045 WP_274791106.1 2201072..2202169(+) (luxP) [Vibrio harveyi strain 160-19]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGTAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCGAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGACGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATTGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTTCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAGGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63