Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   Q7591_RS09490 Genome accession   NZ_CP131783
Coordinates   2017339..2017668 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016C02-074     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012339..2022668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7591_RS09475 (Q7591_09475) - 2013068..2014012 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  Q7591_RS09480 (Q7591_09480) - 2014113..2015138 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  Q7591_RS09485 (Q7591_09485) - 2015151..2017148 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  Q7591_RS09490 (Q7591_09490) comEA/comE1 2017339..2017668 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  Q7591_RS09500 (Q7591_09500) - 2017885..2019081 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  Q7591_RS09505 (Q7591_09505) uvrB 2019269..2021281 (+) 2013 WP_034069277.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=792991 Q7591_RS09490 WP_023109812.1 2017339..2017668(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2016C02-074]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=792991 Q7591_RS09490 WP_023109812.1 2017339..2017668(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2016C02-074]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385