Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PUT85_RS15250 Genome accession   NZ_CP118530
Coordinates   3284986..3285993 (+) Length   335 a.a.
NCBI ID   WP_005450580.1    Uniprot ID   K5TI37
Organism   Vibrio harveyi strain A2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279986..3290993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT85_RS15225 rplD 3280028..3280630 (-) 603 WP_005435074.1 50S ribosomal protein L4 -
  PUT85_RS15230 rplC 3280648..3281277 (-) 630 WP_005435072.1 50S ribosomal protein L3 -
  PUT85_RS15235 rpsJ 3281292..3281603 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  PUT85_RS15240 rpmE 3282060..3282281 (-) 222 WP_005450576.1 50S ribosomal protein L31 -
  PUT85_RS15245 priA 3282578..3284779 (+) 2202 WP_152163704.1 primosomal protein N' -
  PUT85_RS15250 cytR 3284986..3285993 (+) 1008 WP_005450580.1 DNA-binding transcriptional regulator CytR Regulator
  PUT85_RS15255 - 3286159..3286704 (+) 546 WP_005450581.1 SPOR domain-containing protein -
  PUT85_RS15260 hslV 3287290..3287841 (+) 552 WP_009698878.1 ATP-dependent protease subunit HslV -
  PUT85_RS15265 hslU 3287871..3289202 (+) 1332 WP_009698879.1 HslU--HslV peptidase ATPase subunit -
  PUT85_RS15270 - 3289511..3290428 (+) 918 WP_050921610.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36918.48 Da        Isoelectric Point: 5.9796

>NTDB_id=792943 PUT85_RS15250 WP_005450580.1 3284986..3285993(+) (cytR) [Vibrio harveyi strain A2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=792943 PUT85_RS15250 WP_005450580.1 3284986..3285993(+) (cytR) [Vibrio harveyi strain A2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATAGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTTGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCTGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCCGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAATTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGCGACACCATGGCGATTGGTGCTATCCAAGAAGCGAAACGTCTTGGCCTGCGTATTCCGCAGGATTT
ATCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGACGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5TI37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.386

99.104

0.955
  cytR Vibrio cholerae C6706

90.663

99.104

0.899