Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxO   Type   Regulator
Locus tag   PUT85_RS05120 Genome accession   NZ_CP118530
Coordinates   1069570..1070973 (+) Length   467 a.a.
NCBI ID   WP_005444697.1    Uniprot ID   -
Organism   Vibrio harveyi strain A2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context


Location: 1064570..1075973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT85_RS05115 uvrB 1067214..1069244 (+) 2031 WP_005444695.1 excinuclease ABC subunit UvrB -
  PUT85_RS05120 luxO 1069570..1070973 (+) 1404 WP_005444697.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PUT85_RS05125 luxU 1070970..1071314 (+) 345 WP_274790653.1 quorum-sensing phosphorelay protein LuxU -
  PUT85_RS05130 - 1071429..1072322 (-) 894 WP_005444701.1 YvcK family protein -
  PUT85_RS05135 moaA 1072620..1073609 (+) 990 WP_050934861.1 GTP 3',8-cyclase MoaA -
  PUT85_RS05140 moaB 1073711..1074223 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  PUT85_RS05145 moaC 1074250..1074726 (+) 477 WP_005444714.1 cyclic pyranopterin monophosphate synthase MoaC -
  PUT85_RS05150 moaD 1074726..1074983 (+) 258 WP_005444716.1 molybdopterin synthase sulfur carrier subunit -
  PUT85_RS05155 moaE 1074985..1075440 (+) 456 WP_009702831.1 molybdopterin synthase catalytic subunit MoaE -

Sequence


Protein


Download         Length: 467 a.a.        Molecular weight: 52150.57 Da        Isoelectric Point: 5.8838

>NTDB_id=792931 PUT85_RS05120 WP_005444697.1 1069570..1070973(+) (luxO) [Vibrio harveyi strain A2]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ASKFIEPDILTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSRDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=792931 PUT85_RS05120 WP_005444697.1 1069570..1070973(+) (luxO) [Vibrio harveyi strain A2]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCTGTCGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATCGATATCAATATTGTTGGTACAGGCAGAGACGCAATCGAAAGTCTGAACCACCGTA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGATGTATTGCACGCAGTGAAGAAAAGTCAC
CCAGACGTGCCAATTATCTTTATGACTGCCCATGGCTCTATCGATACTGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCTTAATTAAACCATGTGAAGCTGACCGTTTACGCGTCACGGTAAATAATGCGATCCGTAAAGCTACCAAGCTTAAAA
ATGAAGCGGATAATCCGGGCAACCAAAATTACCAAGGCTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACT
ATTGACTCGGCGGCGAGCAGTAAAGCAAGTATTTTCATCACGGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
AATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATTAACTGTGCTGCCATCCCTAAAGATCTGATTGAGA
GCGAGCTATTTGGTCACGTAAAAGGTGCATTTACTGGCGCGGCAAATGACCGACAAGGTGCGGCTGAGCTTGCTGACGGC
GGCACTTTGTTTCTTGATGAGCTTTGTGAGATGGACCTAGACCTCCAGACAAAGTTACTAAGATTCATTCAAACGGGGAC
GTTCCAAAAAGTCGGTTCTTCGAAGATGAAGAGTGTGGACGTACGTTTTGTTTGCGCAACGAATCGCGACCCTTGGAAGG
AAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTACTATCGTTTGTACGTGATCCCATTGCACCTTCCACCGCTGCGTGAG
CGTGGCGAAGATGTAATTGAGATTGCTTATTCGTTGCTTGGTTATATGTCTCACGAAGAAGGCAAAAGCTTCATCCGCTT
CTCGCAAGAGGTGATTGATAGGTTCAATAGTTATGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGCAACA
TTGTGGTATTGAACAACGGCAAAGAGATTACGTTAGACATGCTGCCACCGCCGTTGAACCAGCCAGTGGTTCGTCAATCG
GCATCAAAATTTATTGAACCAGACATTTTGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAGAAAATGGCCATCGA
GCAGGCGATTCAAGCGTGTGATGGCAATATTCCACGCGCTGCGGGCTACTTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAGGGACGAAAAACAAAACGTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

95.931

0.833