Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PUT85_RS02630 Genome accession   NZ_CP118530
Coordinates   523824..524342 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain A2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 518824..529342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT85_RS02620 gshA 521544..523112 (+) 1569 WP_029790338.1 glutamate--cysteine ligase -
  PUT85_RS02625 - 523174..523737 (+) 564 WP_005448430.1 hypothetical protein -
  PUT85_RS02630 luxS 523824..524342 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PUT85_RS02635 - 524435..525709 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  PUT85_RS02640 - 525864..526658 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  PUT85_RS02645 ffh 526872..528254 (+) 1383 WP_005446242.1 signal recognition particle protein -
  PUT85_RS02650 rpsP 528465..528713 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  PUT85_RS02655 rimM 528742..529290 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=792924 PUT85_RS02630 WP_005448429.1 523824..524342(+) (luxS) [Vibrio harveyi strain A2]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=792924 PUT85_RS02630 WP_005448429.1 523824..524342(+) (luxS) [Vibrio harveyi strain A2]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855