Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PUT85_RS02500 Genome accession   NZ_CP118530
Coordinates   501094..502077 (+) Length   327 a.a.
NCBI ID   WP_005452115.1    Uniprot ID   A0A812FCY7
Organism   Vibrio harveyi strain A2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 496094..507077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT85_RS02465 ftsB 496100..496381 (+) 282 WP_005452106.1 cell division protein FtsB -
  PUT85_RS02470 ispD 496383..497093 (+) 711 WP_038899663.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PUT85_RS02475 ispF 497108..497584 (+) 477 WP_005425365.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PUT85_RS02480 truD 497630..498673 (+) 1044 WP_038899661.1 tRNA pseudouridine(13) synthase TruD -
  PUT85_RS02485 surE 498673..499449 (+) 777 WP_009698768.1 5'/3'-nucleotidase SurE -
  PUT85_RS02490 - 499449..500075 (+) 627 WP_005452113.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  PUT85_RS02495 - 500090..501013 (+) 924 WP_009698767.1 peptidoglycan DD-metalloendopeptidase family protein -
  PUT85_RS02500 rpoS 501094..502077 (+) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PUT85_RS02505 mutS 502171..504732 (-) 2562 WP_009698766.1 DNA mismatch repair protein MutS -
  PUT85_RS02510 pncC 504818..505300 (+) 483 WP_005452118.1 nicotinamide-nucleotide amidase -
  PUT85_RS02515 recA 505502..506545 (+) 1044 WP_005436413.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37236.10 Da        Isoelectric Point: 4.7232

>NTDB_id=792921 PUT85_RS02500 WP_005452115.1 501094..502077(+) (rpoS) [Vibrio harveyi strain A2]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=792921 PUT85_RS02500 WP_005452115.1 501094..502077(+) (rpoS) [Vibrio harveyi strain A2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GACGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCCGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAAATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.856