Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWS04_RS21180 Genome accession   NZ_CP118529
Coordinates   671996..673093 (+) Length   365 a.a.
NCBI ID   WP_005453580.1    Uniprot ID   A0A9X3RVB5
Organism   Vibrio harveyi strain 94/17     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 666996..678093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS21150 - 667228..668217 (+) 990 WP_274792971.1 Gfo/Idh/MocA family oxidoreductase -
  PWS04_RS21155 - 668359..669696 (-) 1338 WP_050903997.1 MATE family efflux transporter -
  PWS04_RS21160 - 669820..670134 (-) 315 WP_005453573.1 DUF496 family protein -
  PWS04_RS21165 - 670373..670576 (+) 204 WP_009696233.1 hypothetical protein -
  PWS04_RS21170 - 670670..671323 (+) 654 WP_005453575.1 YceH family protein -
  PWS04_RS21175 - 671320..671646 (+) 327 WP_005453578.1 GIY-YIG nuclease family protein -
  PWS04_RS21180 luxP 671996..673093 (+) 1098 WP_005453580.1 substrate-binding domain-containing protein Regulator
  PWS04_RS21185 luxQ 673093..675672 (+) 2580 WP_274792972.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWS04_RS21190 - 675740..676402 (-) 663 WP_047515332.1 PilZ domain-containing protein -
  PWS04_RS21195 - 676496..677422 (-) 927 WP_009696230.1 DMT family transporter -
  PWS04_RS21200 - 677572..678027 (+) 456 WP_274792973.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41582.03 Da        Isoelectric Point: 6.7059

>NTDB_id=792904 PWS04_RS21180 WP_005453580.1 671996..673093(+) (luxP) [Vibrio harveyi strain 94/17]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=792904 PWS04_RS21180 WP_005453580.1 671996..673093(+) (luxP) [Vibrio harveyi strain 94/17]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCAGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGTAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCGAAGCACACCTATTACAGCGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGACGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATTGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63