Detailed information NTG0792902

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: PWS04_RS14035
• Genome accession: NZ_CP118528
• Coordinates: 2900819..2902240 (-)
• Length: 473 a.a.
• NCBI ID: WP_005445536.1
• Uniprot ID: A0A9X3ML51
• Organism: Vibrio harveyi strain 94/17
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2895819..2907240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWS04_RS14010	-	2896513..2897163 (+)	651	WP_274791751.1	thiopurine S-methyltransferase	-
PWS04_RS14015	purT	2897240..2898415 (-)	1176	WP_009697365.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
PWS04_RS14020	cdd	2898564..2899451 (-)	888	WP_005445539.1	cytidine deaminase	-
PWS04_RS14025	-	2899707..2900384 (-)	678	WP_005445538.1	LrgB family protein	-
PWS04_RS14030	-	2900386..2900760 (-)	375	WP_274791752.1	CidA/LrgA family protein	-
PWS04_RS14035	sbcB	2900819..2902240 (-)	1422	WP_005445536.1	exodeoxyribonuclease I	Machinery gene
PWS04_RS14040	-	2902402..2903082 (-)	681	WP_005445535.1	DUF1826 domain-containing protein	-
PWS04_RS14045	-	2903304..2904677 (-)	1374	WP_274791753.1	L-cystine transporter	-
PWS04_RS14050	-	2904872..2905567 (-)	696	WP_005445533.1	NAD(P)H-binding protein	-
PWS04_RS14055	-	2906303..2906914 (+)	612	WP_274791754.1	flavin reductase family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54569.91 Da
• Isoelectric Point: 4.9808

>NTDB_id=792902 PWS04_RS14035 WP_005445536.1 2900819..2902240(-) (sbcB) [Vibrio harveyi strain 94/17]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=792902 PWS04_RS14035 WP_005445536.1 2900819..2902240(-) (sbcB) [Vibrio harveyi strain 94/17]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATCGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGATCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTGGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.281	100	0.793