Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWS04_RS09425 Genome accession   NZ_CP118528
Coordinates   1941846..1942364 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain 94/17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936846..1947364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS09415 gshA 1939566..1941134 (+) 1569 WP_017817672.1 glutamate--cysteine ligase -
  PWS04_RS09420 - 1941196..1941759 (+) 564 WP_005448430.1 hypothetical protein -
  PWS04_RS09425 luxS 1941846..1942364 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWS04_RS09430 - 1942457..1943731 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWS04_RS09435 - 1943886..1944680 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  PWS04_RS09440 ffh 1944894..1946276 (+) 1383 WP_005446242.1 signal recognition particle protein -
  PWS04_RS09445 rpsP 1946487..1946735 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWS04_RS09450 rimM 1946764..1947312 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=792894 PWS04_RS09425 WP_005448429.1 1941846..1942364(+) (luxS) [Vibrio harveyi strain 94/17]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=792894 PWS04_RS09425 WP_005448429.1 1941846..1942364(+) (luxS) [Vibrio harveyi strain 94/17]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855