Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PWS04_RS09090 Genome accession   NZ_CP118528
Coordinates   1878167..1879150 (+) Length   327 a.a.
NCBI ID   WP_005452115.1    Uniprot ID   A0A812FCY7
Organism   Vibrio harveyi strain 94/17     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873167..1884150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS09055 ftsB 1873173..1873454 (+) 282 WP_005452106.1 cell division protein FtsB -
  PWS04_RS09060 ispD 1873456..1874166 (+) 711 WP_038899663.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PWS04_RS09065 ispF 1874181..1874657 (+) 477 WP_009698769.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PWS04_RS09070 truD 1874703..1875746 (+) 1044 WP_050902432.1 tRNA pseudouridine(13) synthase TruD -
  PWS04_RS09075 surE 1875746..1876522 (+) 777 WP_009698768.1 5'/3'-nucleotidase SurE -
  PWS04_RS09080 - 1876522..1877148 (+) 627 WP_005452113.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  PWS04_RS09085 - 1877163..1878086 (+) 924 WP_009698767.1 peptidoglycan DD-metalloendopeptidase family protein -
  PWS04_RS09090 rpoS 1878167..1879150 (+) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PWS04_RS09095 mutS 1879244..1881829 (-) 2586 WP_274792435.1 DNA mismatch repair protein MutS -
  PWS04_RS09100 - 1882002..1883342 (+) 1341 WP_140272598.1 site-specific integrase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37236.10 Da        Isoelectric Point: 4.7232

>NTDB_id=792891 PWS04_RS09090 WP_005452115.1 1878167..1879150(+) (rpoS) [Vibrio harveyi strain 94/17]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=792891 PWS04_RS09090 WP_005452115.1 1878167..1879150(+) (rpoS) [Vibrio harveyi strain 94/17]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.856