Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PWS04_RS07845 Genome accession   NZ_CP118528
Coordinates   1634706..1635221 (+) Length   171 a.a.
NCBI ID   WP_005451501.1    Uniprot ID   A0A9X3RXU4
Organism   Vibrio harveyi strain 94/17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629706..1640221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS07825 - 1629806..1632376 (-) 2571 WP_274792384.1 PBP1A family penicillin-binding protein -
  PWS04_RS07830 pilM 1632555..1633571 (+) 1017 WP_029789968.1 type IV pilus assembly protein PilM Machinery gene
  PWS04_RS07835 pilN 1633555..1634130 (+) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWS04_RS07840 pilO 1634123..1634716 (+) 594 WP_274792385.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWS04_RS07845 pilP 1634706..1635221 (+) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  PWS04_RS07850 pilQ 1635256..1637007 (+) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  PWS04_RS07855 aroK 1637197..1637715 (+) 519 WP_005451507.1 shikimate kinase AroK -
  PWS04_RS07860 aroB 1637747..1638847 (+) 1101 WP_274792386.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19142.27 Da        Isoelectric Point: 10.1513

>NTDB_id=792884 PWS04_RS07845 WP_005451501.1 1634706..1635221(+) (pilP) [Vibrio harveyi strain 94/17]
MRSKSLLMVCIAGVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=792884 PWS04_RS07845 WP_005451501.1 1634706..1635221(+) (pilP) [Vibrio harveyi strain 94/17]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAATT
ACGAACCCGAAATATTGCGTGCACCTTTCGAATTACCAAAAGAGGCAACGATTGCGACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGGGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.058

100

0.901
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55