Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PVT72_RS07030 Genome accession   NZ_CP118495
Coordinates   1402811..1403407 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain FC02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397811..1408407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT72_RS07000 (PVT72_07000) - 1398025..1398480 (+) 456 WP_003154599.1 flavodoxin -
  PVT72_RS07005 (PVT72_07005) dapD 1398562..1399272 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PVT72_RS07010 (PVT72_07010) - 1399343..1400467 (+) 1125 WP_139885251.1 N-acetyldiaminopimelate deacetylase -
  PVT72_RS07015 (PVT72_07015) - 1400528..1400773 (+) 246 WP_003154596.1 YkuS family protein -
  PVT72_RS07020 (PVT72_07020) - 1400807..1401613 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  PVT72_RS07025 (PVT72_07025) - 1401901..1402359 (+) 459 WP_139885252.1 TlpA disulfide reductase family protein -
  PVT72_RS07030 (PVT72_07030) rok 1402811..1403407 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  PVT72_RS07035 (PVT72_07035) - 1403428..1404420 (-) 993 WP_014304925.1 hypothetical protein -
  PVT72_RS07040 (PVT72_07040) - 1404566..1405168 (+) 603 WP_060386913.1 molybdenum cofactor guanylyltransferase -
  PVT72_RS07045 (PVT72_07045) - 1405220..1406239 (+) 1020 WP_139886634.1 molybdopterin-synthase adenylyltransferase MoeB -
  PVT72_RS07050 (PVT72_07050) glp 1406257..1407549 (+) 1293 WP_239819493.1 gephyrin-like molybdotransferase Glp -
  PVT72_RS07055 (PVT72_07055) mobB 1407510..1408031 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=792781 PVT72_RS07030 WP_003154591.1 1402811..1403407(+) (rok) [Bacillus velezensis strain FC02]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=792781 PVT72_RS07030 WP_003154591.1 1402811..1403407(+) (rok) [Bacillus velezensis strain FC02]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843