Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7593_RS02480 Genome accession   NZ_CP131781
Coordinates   523053..523418 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 2016S09-057     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518053..528418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7593_RS02450 (Q7593_02450) pyrR 518675..519187 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  Q7593_RS02455 (Q7593_02455) ruvX 519299..519733 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  Q7593_RS02460 (Q7593_02460) - 519733..520302 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  Q7593_RS02465 (Q7593_02465) - 520351..521244 (-) 894 WP_015649761.1 energy transducer TonB -
  Q7593_RS02470 (Q7593_02470) gshB 521391..522344 (-) 954 WP_003100943.1 glutathione synthase -
  Q7593_RS02475 (Q7593_02475) pilG 522599..523006 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  Q7593_RS02480 (Q7593_02480) pilH 523053..523418 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  Q7593_RS02485 (Q7593_02485) - 523469..524005 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  Q7593_RS02490 (Q7593_02490) pilJ 524090..526138 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  Q7593_RS02495 (Q7593_02495) pilK 526199..527074 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=792768 Q7593_RS02480 WP_003084587.1 523053..523418(+) (pilH) [Pseudomonas aeruginosa strain 2016S09-057]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=792768 Q7593_RS02480 WP_003084587.1 523053..523418(+) (pilH) [Pseudomonas aeruginosa strain 2016S09-057]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGATGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364