Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PVT72_RS01770 Genome accession   NZ_CP118495
Coordinates   324836..325273 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain FC02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 319836..330273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT72_RS01730 (PVT72_01730) - 320417..320578 (-) 162 Protein_300 hypothetical protein -
  PVT72_RS01735 (PVT72_01735) - 320695..321897 (+) 1203 WP_024084872.1 GTP-binding protein -
  PVT72_RS01740 (PVT72_01740) - 321962..323098 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  PVT72_RS01745 (PVT72_01745) - 323113..323547 (+) 435 WP_003156592.1 RDD family protein -
  PVT72_RS01750 (PVT72_01750) - 323619..323939 (+) 321 WP_015388719.1 YckD family protein -
  PVT72_RS01755 (PVT72_01755) - 324043..324159 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  PVT72_RS01760 (PVT72_01760) - 324158..324376 (+) 219 Protein_306 family 1 glycosylhydrolase -
  PVT72_RS01765 (PVT72_01765) comJ 324417..324814 (-) 398 Protein_307 competence protein ComJ -
  PVT72_RS01770 (PVT72_01770) nucA/comI 324836..325273 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PVT72_RS01775 (PVT72_01775) hxlB 325632..326189 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  PVT72_RS01780 (PVT72_01780) hxlA 326186..326821 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  PVT72_RS01785 (PVT72_01785) - 327053..327415 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=792758 PVT72_RS01770 WP_003156588.1 324836..325273(-) (nucA/comI) [Bacillus velezensis strain FC02]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=792758 PVT72_RS01770 WP_003156588.1 324836..325273(-) (nucA/comI) [Bacillus velezensis strain FC02]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641